Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_G05
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   3.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   4.7  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   6.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    24   8.1  

>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 25  PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 129
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +2

Query: 8   DNREKHRMRGGHPLLLY-------LGICP 73
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 196 KLASLAPWHSPSCSIFRDGIIF 131
           KL    PW    C IF D I++
Sbjct: 214 KLQGFPPWQLRLCEIFHDPILY 235


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 253 VTPSLPQTGSFSRVHIHGCKL 191
           ++PSLP  G+F    +HG  L
Sbjct: 324 MSPSLPIEGTFRSFRVHGATL 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,636
Number of Sequences: 5004
Number of extensions: 41413
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)