Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_G05
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1092 + 34469732-34470118 33 0.090
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639... 31 0.28
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027... 28 3.4
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 28 3.4
09_01_0053 + 873918-874411,875255-875492,875682-875702 27 5.9
09_04_0013 - 13726386-13726848,13726932-13727140,13727223-137273... 27 7.8
07_03_0821 + 21760655-21760912,21761158-21761328,21761850-217620... 27 7.8
03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786... 27 7.8
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 7.8
>01_06_1092 + 34469732-34470118
Length = 128
Score = 33.1 bits (72), Expect = 0.090
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 177 GAKLASLHPCICTREKDPVCGSDGVTY 257
G A L P C R DPVCG+DGVTY
Sbjct: 49 GGSEAQLCPVRCFRP-DPVCGADGVTY 74
>01_01_0010 -
62670-62783,62877-63020,63339-63431,63665-63779,
63902-64152,64248-64431,64694-64950
Length = 385
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -1
Query: 247 PSLPQTGSFSRVHIHGCKLASLAPWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 86
PS FS V I+ C L L +S S +DG++F+ + H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242
>08_01_1007 -
10201181-10201298,10202180-10202484,10202577-10202726,
10202954-10202956
Length = 191
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +3
Query: 99 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 197
+ NKC +EC QK P L K+ DG CQGA L L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162
>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 375 CSNGFSFPPPTLCYYRKDRCVR-CSSLVWTVTRIL 274
CS G S P + Y R RC++ CS L + R+L
Sbjct: 1024 CSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLL 1058
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 28 HARWASPATVPWNMPPSVALTEKLTPT 108
HA+W+ ATV + P + + E+L T
Sbjct: 192 HAKWSPAATVTFMYEPEIRINEELMET 218
>09_04_0013 -
13726386-13726848,13726932-13727140,13727223-13727323,
13727515-13727740
Length = 332
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 238 PQTGSFSRVHIHGCKLASLAPWHSPSC 158
P F+ + +HGC + LA HS SC
Sbjct: 232 PFVAEFADLVLHGCAVDPLAVEHSASC 258
>07_03_0821 +
21760655-21760912,21761158-21761328,21761850-21762026,
21762165-21762242
Length = 227
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 84 SNGKTYANKCSLECTQKIIPSLKMEHDGECQGAKLAS 194
S G+ + +CS C++ +P+ + G+ + L S
Sbjct: 117 SPGEAWEKQCSASCSESFVPTENAHYQGQVELISLGS 153
>03_02_0372 +
7864015-7864065,7864167-7864208,7864292-7864322,
7864472-7864653
Length = 101
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 204 CICTREKDPVCGSDGVTYSNLCLLKCASLSKPSLSIEHTGPCDNNRV*AVGN 359
C T+ ++P C + Y N+C KC + + + PC NN + GN
Sbjct: 51 CSATKRQEP-C----LKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGN 97
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Frame = +3
Query: 159 HDGECQGAKLASLHPCICTREKDPV--CGSDGVTYSNLC--LLKCASLSKPSLSIEHTGP 326
H G+C G L C C ++ P C ++ T + C +L C P H G
Sbjct: 325 HAGKCGGCPLQGRRTCPCGKKDYPSLDCDAEAATCGSTCEKVLGCGRHKCPERC--HRGS 382
Query: 327 C 329
C
Sbjct: 383 C 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,538
Number of Sequences: 37544
Number of extensions: 293027
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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