Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_G04
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.40 
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   3.7  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.7  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   5.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   6.5  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = +3

Query: 207  VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDNGEGGFWVSYEDP 383
            V  L+SYP++  ++   + +    +LR++N P +  F  +A   P    E GF+V   D 
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873

Query: 384  DT----AGNKASYVKTKNLGGVSI-MDLSMD 461
            +T    A  +AS+   +N   + + + +SMD
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISMD 1904


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 165 IHADEGGEAGPYTKVQGLLSY 227
           +H  + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 82  PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 171
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
 Frame = +3

Query: 96  LGISTTGRTWKLDSDSEISGVPPI------HADEGGEAGPYTKVQGLLSYPEICAKLINP 257
           LG+S  G+T+ L   S+  GV  +      +A +G EA P T V+ L S  E C K++  
Sbjct: 93  LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC-KIVEA 150

Query: 258 NQ--NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYED 380
           ++   G+ P   KV + ++ + ++  ++ + N +   ++S+ +
Sbjct: 151 SKFLRGEAPLDIKVPN-TEYYASHFPKIEEKNYQYAIYLSFAE 192


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 12  PQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 152
           PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S
Sbjct: 781 PQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 378  LRKKPRSHLHHYHQEGGRHRS 316
            LR   + H H YH++ G+++S
Sbjct: 1190 LRVPQKKHKHFYHRDDGKYKS 1210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,869
Number of Sequences: 5004
Number of extensions: 59738
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)