Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F24
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   4.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.5  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    25   7.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.5  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 86  HHRNPPDTPHRSYHRPVPMSSGLH-NP 9
           ++RNPP T  R  +  VP  S LH NP
Sbjct: 451 NNRNPPRTNSRPSNASVPPPSSLHKNP 477


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 290  YYSIACLPACLG*IKRNLRQDIRND 216
            YY I   P  LG IKRN++ D   D
Sbjct: 1556 YYIIIKRPIALGKIKRNIKNDRYGD 1580


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 296 LHYYSIACLPACLG*IKRNLRQDIRNDGCFQN 201
           +H ++  C P C+G I   L  D   + C QN
Sbjct: 37  IHQFTSTCWPKCIGNIGNKL--DKSEEQCLQN 66


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 96   GQIITRPDSSRILRAVVGVATAVGDRATIAR 188
            G I+TR +      A  G  T VGD A + R
Sbjct: 1177 GYILTRAEKKAYYTAADGTKTFVGDLAQLTR 1207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,618
Number of Sequences: 5004
Number of extensions: 31103
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)