Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F24
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0024 - 10714741-10716241,10716774-10717840                       29   3.2  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    28   5.5  
11_04_0012 - 12167924-12167986,12168057-12168242,12168398-121684...    27   9.7  
11_01_0337 - 2519732-2521093                                           27   9.7  
04_04_1682 + 35332907-35333720,35334583-35335202                       27   9.7  
01_06_1358 - 36637369-36637573,36637643-36638119,36638217-366384...    27   9.7  
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    27   9.7  

>06_02_0024 - 10714741-10716241,10716774-10717840
          Length = 855

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +3

Query: 132 LRAVVGVATAVGDRATIARVATLVLETTVVSNILSQVALNSS*AGRQAGDRVIVKE 299
           L +++G   A   R       T+VL + VV  +  QV L S  AG   GD  +VKE
Sbjct: 121 LVSLMGAYAAGTCRDRTTTTFTVVLVSLVVVYVALQVVLASLPAGEHDGDEHVVKE 176


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 86  HHRNPPDTPHRSYHRPVP 33
           HH +PP  PH  +H P P
Sbjct: 64  HHPHPPHHPHPPHHHPHP 81


>11_04_0012 -
           12167924-12167986,12168057-12168242,12168398-12168435,
           12168695-12168794
          Length = 128

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 30  HGNRTVVTSVGGIRRVTVVARCGQIITRPDSSRILRAVVGVATAVGDRATIARVAT-LVL 206
           HG  T+    GG+   TV  R GQ +   D   ++  +V    A   + +IA+ A+  V 
Sbjct: 23  HGRETMQREAGGLDSDTVGRRIGQALPLTD---VIGPLVDHQAAASLKDSIAKEASDAVA 79

Query: 207 ETTVVSNI 230
            TT  SN+
Sbjct: 80  ATTSGSNV 87


>11_01_0337 - 2519732-2521093
          Length = 453

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   TIRVMETRTHGNR-TVVTSVGGIRRVTVVARCGQIITRPDSS 125
           T+RV E      R T VT +G  + + V A C + +  PD++
Sbjct: 343 TVRVFEADMEARRWTEVTDIGDDQALFVSATCSRALRLPDNN 384


>04_04_1682 + 35332907-35333720,35334583-35335202
          Length = 477

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  CGQIITRPDSSRILRAVVGVATAVGDRATIARVATLVLETT 215
           CG+I  RPDS  + +++    + +G   T   + +++ +++
Sbjct: 252 CGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSS 292


>01_06_1358 -
           36637369-36637573,36637643-36638119,36638217-36638446,
           36638545-36638677,36638772-36638860,36638959-36639029,
           36639116-36639185,36640178-36640300,36640492-36640941
          Length = 615

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 116 WTCYNLTASGHHRNPPDTPHRSYHRPV 36
           WT  NLTA    R  PDTP  ++HR V
Sbjct: 134 WTEENLTAVA--RQSPDTPTLNWHRRV 158


>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 104 NLTASGHHRNPPDTPHRSYHRPVPMSS---GLHN 12
           ++ ++  H+NP   PH+++ RP P      G HN
Sbjct: 577 DVVSTEKHKNPTGGPHQNFGRPQPADGKKLGKHN 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,025,827
Number of Sequences: 37544
Number of extensions: 203988
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)