Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F23
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...    29   2.5  
03_02_1038 - 13579407-13579466,13579630-13579739,13579819-135799...    29   2.5  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   3.3  
07_03_0441 + 18256103-18258076                                         28   3.3  
03_03_0098 + 14392509-14392748,14393116-14393196,14393517-143937...    28   3.3  
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091     28   4.4  
10_08_0293 - 16561932-16562216,16562928-16562936,16563188-165632...    27   5.8  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    27   5.8  
03_05_0294 + 22855503-22855946,22856346-22856399                       27   7.7  

>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = -3

Query: 262 KNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDECIRFLKKLQRSFVNGI 104
           + + I A+ P+ A      + ++    +   F+  D C+ F+K+ + ++V+GI
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGI 175


>03_02_1038 -
           13579407-13579466,13579630-13579739,13579819-13579916,
           13579991-13580077,13580412-13580517,13580946-13581030,
           13581139-13581192,13581274-13581423,13581561-13581572
          Length = 253

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 141 KRIHSSKDKNVVSS-PLGVMMLMLLYKAGAGEGSRA--EIDKFLGNGDYSGVANPYISLS 311
           +R+     +N+VS+ P  +  L+L+   G  + +     I    G   Y  +A  ++  S
Sbjct: 98  ERVDWDGTRNLVSAMPRTIKRLVLVSSIGVTKYNELPWSIMNLFGVLKYKKMAEDFVQNS 157

Query: 312 *KPFSEMNPDYFTNGPIKSY 371
             PF+ + P   T+GP  SY
Sbjct: 158 GIPFTIIRPGRLTDGPYTSY 177


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 243 HDYLHRRQLCTEALASSRLMVKTQHSCPSM 154
           H+YLH+ +   E + +SRLMV+   +C ++
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNCVTL 408


>07_03_0441 + 18256103-18258076
          Length = 657

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 286 TPL*SPLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDE-CIRFLKKLQRSFV 113
           T L  P P   S ++  P+P+P L R +S+I  +   T        C  FL +L  +FV
Sbjct: 37  TDLSDPRPYAASSASSSPTPSPWLARVVSLILRSPPATLAADLRAFCATFLLRLSPAFV 95


>03_03_0098 +
           14392509-14392748,14393116-14393196,14393517-14393767,
           14393887-14394239,14394547-14394848
          Length = 408

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 321 TVFNLS*CTDWQPRYNLHCLKTC--RSPHDYLHR 226
           TVF LS   +WQ R  L  L+ C   +P+  +HR
Sbjct: 280 TVFLLSVYPEWQARLRLEALRECGKENPNAIMHR 313


>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
          Length = 889

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 300 CTDWQPRYNLHCLKTC 253
           CTD+ P+Y  HC  +C
Sbjct: 301 CTDYNPKYKEHCSTSC 316


>10_08_0293 -
           16561932-16562216,16562928-16562936,16563188-16563264,
           16563414-16563813
          Length = 256

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 207 ALASSRLMVKTQHSCPSMNVYVSLRNCKEVLSMALPK 97
           A  SS  + KTQ   PS + Y +   CKE++  +LP+
Sbjct: 180 ATLSSTALDKTQDH-PSRSQYFNQDGCKEIMDYSLPR 215


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 165 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG 266
           +NV  SPL + + + L  AGAG  +R ++   LG
Sbjct: 35  RNVAFSPLSLHVALSLVAAGAGGATRDQLASALG 68


>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 168 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFLG 266
           NV  SPL + + + L  AGAG  +R ++   LG
Sbjct: 45  NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLG 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,307
Number of Sequences: 37544
Number of extensions: 264984
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)