Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F23
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF067947-8|AAC19225.1|  343|Caenorhabditis elegans Kinetochore n...    27   9.1  

>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 125 KKFCQWHCLRLSCCTSWSEE*NARTLQTAINRQ 27
           K++CQW     + CT  +E       Q A+ RQ
Sbjct: 49  KRYCQWKDCMCAKCTLIAERQRVMAAQVALRRQ 81


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = -1

Query: 297 TDWQPRYNLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHS 166
           +++  +++++C K C    +    ++L   +L +S L +K  H+
Sbjct: 282 SEFDKKFSIYCPKACEELRNVQSSKELECTSLCTSELSIKVLHN 325


>AF067947-8|AAC19225.1|  343|Caenorhabditis elegans Kinetochore null
           protein 3 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 274 SPLPKNLSISARLPSPAP---ALYRSISIITPNGEDTTFLSFDEC 149
           S +PK   ++  +P   P   AL   +S +T   +D TFL+ D C
Sbjct: 25  SAVPKK-KVAREVPRAGPPVFALEHDVSEVTDRNKDGTFLAADAC 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,302
Number of Sequences: 27780
Number of extensions: 230777
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)