Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F22
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   1.3  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    24   3.1  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    23   4.0  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    23   5.3  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    23   7.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    23   7.1  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    22   9.3  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 143 TEAISACVGPVPASLRIARANLRPNGDSKKVFIPNKNDIAPWLKVK 6
           ++ +++ V P+   ++ A   LRP      V I +K D   WLK K
Sbjct: 848 SKKLNSYVVPMETFVKYALEKLRPLISPDSVCILSKEDKKHWLKYK 893


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 164 LSNSNPRTEAISACVGPVPASLRI-ARANLRP-NGDSKKVFIPNKNDI 27
           L NSN   E   A       S+ + A A+ +  +G  KKV + +KNDI
Sbjct: 264 LRNSNKDLEMTDASSSETSMSIPVHADAHFQSQSGLGKKVIVQHKNDI 311


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 107 ASLRIARANLRPN-GDSKKVFIPNKN 33
           A    A AN  P   + KKV IPNKN
Sbjct: 62  AKAEAAAANNPPGVSEEKKVAIPNKN 87


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -2

Query: 177 PNYVSVQLKPENRGYLSLCRSCARFTEDS*SQFKAQWRQQKSFYPE*ERYCALV 16
           P Y+     P   G  + C    R T DS  QF+ Q       Y E +  CAL+
Sbjct: 200 PKYLVKSKNPVEIGQPANCELRPRDTTDSYHQFQVQ-----RVYDEWKEECALI 248


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 149 PRTEAISACVGPVPASLRIARANLRPNGDSKKVFIPNKND 30
           PRT + +A + P     ++  A+ + NG+S  V +  +ND
Sbjct: 449 PRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECEND 488


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 164 LSNSNPRTEAISACVGPVPASLRIARANLRPNGD 63
           LS++NP +  +S  VGP+     + R+  R  GD
Sbjct: 413 LSSTNPHSTLLSTSVGPL-RKFPLNRSYSREVGD 445


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 41  SG*KLFCCLHWALNWL 88
           SG K F C  W + WL
Sbjct: 246 SGGKTFGCTGWRVGWL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,164
Number of Sequences: 5004
Number of extensions: 10040
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)