Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F22
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    25   8.6  

>08_02_1416 - 26915306-26915459,26915553-26915668,26915798-26915910,
            26915995-26916130,26916219-26916338,26916472-26916648,
            26916790-26916862,26916948-26917083,26917179-26918055,
            26918138-26918331,26918438-26918620,26918730-26918796,
            26918900-26919092,26919317-26919363,26919478-26919574,
            26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 161  SNSNPRTEAISACVGPVPASLRIARANLRPNGDSKKVFIPNKNDIAP 21
            ++ N + E   A  GP P S R++R    P+   KKV   +   ++P
Sbjct: 870  TSPNKKNEEKCAADGPYPESPRLSRFPNLPDMSPKKVSAAHNVYVSP 916


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,446,171
Number of Sequences: 37544
Number of extensions: 63480
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)