Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F22
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-5|AAK68534.3|  444|Caenorhabditis elegans Hypothetical ...    27   1.8  
U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF040649-7|AAB95002.1|  295|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC024830-5|AAK68534.3|  444|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.4 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 149 PRTEAISACVGPVPASLRIARANL 78
           PRT  ++AC GP P   +I  A L
Sbjct: 391 PRTTIVTACPGPTPIQRQITTAML 414


>U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical
           protein C01B10.9 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 104 SLRIARANLRPNGDSKKVFIPNKNDIA-PW 18
           S R + A   PNG+S+  +IP+K  IA PW
Sbjct: 135 SSRRSAAFYWPNGESQFPYIPHKPKIARPW 164


>AF040649-7|AAB95002.1|  295|Caenorhabditis elegans Hypothetical
           protein F33H12.1 protein.
          Length = 295

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 113 QDLHRLR*PLFSGLSWT 163
           +DLHR R PLF G ++T
Sbjct: 149 RDLHRKRPPLFYGFNFT 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,848,717
Number of Sequences: 27780
Number of extensions: 55169
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)