Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F22
         (181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   4.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   5.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    19   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    18   9.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    18   9.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 89  RANLRPNGDSKKVFIPNKND 30
           ++  R  G  K   IP+KND
Sbjct: 181 KSRSRKKGGLKDNLIPDKND 200


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 25  AISFLFGIK 51
           AISF+FG+K
Sbjct: 186 AISFVFGMK 194


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 177 PNYVSVQLKPENRGYL 130
           P+++     PE+RG++
Sbjct: 269 PHFIKDDYGPESRGFV 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 GPTQAEIASVLGFELDR 165
           GPT A+ A +    +DR
Sbjct: 387 GPTPAQKARMRALNIDR 403


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 111 HRTYTG*DSLCSR 149
           H TY   +SLC R
Sbjct: 41  HHTYIIYESLCGR 53


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 111 HRTYTG*DSLCSR 149
           H TY   +SLC R
Sbjct: 41  HHTYIIYESLCGR 53


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 44  PNKNDIAPWLK 12
           P  + +APW+K
Sbjct: 336 PQTHKMAPWVK 346


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 44  PNKNDIAPWLK 12
           P  + +APW+K
Sbjct: 336 PQTHKMAPWVK 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,476
Number of Sequences: 438
Number of extensions: 756
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)