Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F21
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   4.5  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.9  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   7.8  

>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 535 KLIQLNIIKTAYISSNPSYKSPIKRLMIMLPLYSQ 431
           +L  ++  +TA++ +NP    PI  + I  P+  Q
Sbjct: 656 RLATISAFRTAFLQANPMVLEPIMNVSITAPVEHQ 690


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 414 NITSVGRLDFKLLTKRHVFDKQVNI 340
           NIT    L+++LL + HV  K+++I
Sbjct: 235 NITDQRTLEYELLNRFHVISKRIDI 259


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 541 NKKLIQLNIIKTAYISSNPSY 479
           +KKL  L I++ A +S+NP Y
Sbjct: 338 SKKLAALTIMEVAQLSTNPRY 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,453
Number of Sequences: 5004
Number of extensions: 17948
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)