Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F20
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    31   0.39 
U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   4.8  
Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical p...    27   6.3  

>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 130 GGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKK 243
           G  +RTK +  EH +   P G +RK+V    N E  +K
Sbjct: 23  GSGKRTKSDRVEHKHASQPGGDTRKVVQTASNGEAKRK 60


>U41993-5|AAA83447.2|  451|Caenorhabditis elegans Hypothetical
           protein F44A2.2 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   LLSSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIF 120
           L +S L VFC  +    +T  +AFF+    Y F+    IF
Sbjct: 48  LATSRLAVFCEKSHVERLTDCDAFFESTSEYYFERSPIIF 87


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 259 SIVYWTFCCSPYSL 218
           SI+Y+TFCC P+S+
Sbjct: 253 SILYFTFCCVPFSV 266


>Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical
           protein F46B3.15 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 206 IFLECPEGSK*FVCSVASRLVRCLPPCPVKMC 111
           +F  CP+ S   V    ++ V   PPC +K C
Sbjct: 88  VFTTCPKMSSCIVVDGKAKCVPRSPPCTIKQC 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,363,831
Number of Sequences: 27780
Number of extensions: 254619
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)