Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F19
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        30   0.19 
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   2.4  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   3.1  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    24   9.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   9.6  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 130 VVCELYCFIHLMHFSCIIYKKNISILHYFSI 38
           ++C L  F  L+H  C IY   +   H+F+I
Sbjct: 38  ILCFLSFFALLLHLPCSIYSHTLHFFHHFTI 68


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 106 IHLMHFSCIIYKKNI 62
           IH+MHF+C++Y  ++
Sbjct: 153 IHIMHFTCLLYHGSV 167


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 446 FYVGNAFTRAPCQL*SGTITCIFNTYLY 363
           +YVG     A  Q  SG I  +FNT+L+
Sbjct: 112 WYVGKGVATASLQHPSGRIISLFNTHLH 139


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 272 HYELFKVKPSPMSIFH---LQGKFMSSL 198
           HYE+ KV+P  + + H   + GK  S+L
Sbjct: 97  HYEMHKVRPEVICVCHVHSIYGKAFSAL 124


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 202  LDINLPCRWNIDIGEGFTLN 261
            L IN+PCR  + +G+   LN
Sbjct: 1260 LGINMPCRTVVFLGDSLQLN 1279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,684
Number of Sequences: 5004
Number of extensions: 36149
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)