Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F18
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    29   0.47 
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   2.5  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   4.4  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   7.6  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   7.6  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 412 SRSSFSNYP*IHSLCRELM*LLLRP 338
           S SS  N+P  H+LC++L  LLLRP
Sbjct: 731 SGSSNINFPNSHTLCQKLCMLLLRP 755


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 256 TLEQVKQAKENAGVEQVCINLKTGDTTKGEVGV 354
           TL Q    K+ AGV     NL TG  T  E+G+
Sbjct: 403 TLAQAALVKQAAGVSVFVGNLGTGSQTWAELGI 435


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 191 SKIEDASANIKERFAQNFILST 126
           +KI+D++ANI  R+A+N  L T
Sbjct: 568 NKIDDSNANIGRRYARNDELGT 589


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 478 KHWETFESNLKYAVDVLQ 531
           + W +FE+N KY  D++Q
Sbjct: 278 EEWHSFEANQKYFADIVQ 295


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 548 PSRLSPCKTSTAYFRLLSKVSQCFGVGLSTMPAIIW 441
           P R S   T +A FR+ ++ S+  G+ +     IIW
Sbjct: 735 PLRRSHLSTGSALFRISTQASKARGITVYLRNDIIW 770


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 145 CANLSFMFAEASSILERYA-LARDAGFKAVESGFPFGCTLEQVKQAKENA 291
           C N+SF + E  S+L     +A  +G     +       L  + Q+ ENA
Sbjct: 394 CVNISFNYVEGESLLMGLKNIALSSGSACTSASLEPSYVLRAIGQSDENA 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,671
Number of Sequences: 5004
Number of extensions: 41665
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)