Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F18
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    31   0.83 
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    29   3.4  
07_03_1344 - 25912639-25914060                                         28   4.4  
07_03_0786 + 21510477-21511451,21512272-21512499                       27   7.7  

>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 259 LEQVKQAKENAGVEQVCINLKTGDTTKGEVGVTSVPGKENEFKD-NLKTTIDY 414
           LEQ+ Q +E   +++    LK       E+G+TS+   EN+F+D  LK T DY
Sbjct: 162 LEQIDQEREGEQIDRAL--LKNVLDIFVEIGLTSMDYYENDFEDFLLKDTADY 212


>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 393 FENDDRLCKGRERKKNPYNGRHSGQTHAKALGNFREQSEVRCRCF 527
           +E+D  +C  RE  K P+ G  S  + ++A G   E+ EV  + F
Sbjct: 95  YESDGEVCVRREAGKRPHRGGGS-SSESEADGEEEEEEEVTPKVF 138


>07_03_1344 - 25912639-25914060
          Length = 473

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 211 DAGFKAVESGFPFGCTLEQVKQAKENAGVEQVCINLKTGDTTKGEVGV 354
           +AG  A+ S          V+     A + Q  + L TG+T  GE+GV
Sbjct: 244 EAGIGAIASQLADRLPAGSVRLNSRAAAIGQSSVTLDTGETVSGELGV 291


>07_03_0786 + 21510477-21511451,21512272-21512499
          Length = 400

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 514 RTSDCSRKFPSAL--AWVCPLCR 452
           R+ DC    P+ L  +W+C LCR
Sbjct: 361 RSDDCVASLPAVLPESWICSLCR 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,502
Number of Sequences: 37544
Number of extensions: 252747
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)