Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F17
         (229 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    27   2.1  
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428...    25   6.5  
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814...    25   6.5  
12_02_0061 - 13063434-13063525,13063679-13064566,13064912-130649...    25   8.6  
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249...    25   8.6  
02_04_0536 + 23730396-23731736                                         25   8.6  
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760...    25   8.6  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    25   8.6  

>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 121 VLYTYPAHFRAYSAFIAAQYSG 186
           VL+T+  +  A+ A IAA+YSG
Sbjct: 565 VLHTFDGNKNAFKALIAAEYSG 586


>10_07_0130 +
           13241085-13241151,13241268-13241339,13242458-13242862,
           13243057-13243112,13244116-13244274,13244379-13244498,
           13244591-13245361,13245902-13246078,13246192-13246669,
           13247502-13248094
          Length = 965

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 216 KNRGLLSQLAPG-ILSGDKRTVSAEMRWISIKYPRQPGSEPSR 91
           +NRG     A   ++ G   TV A  RW+ ++    PG E  R
Sbjct: 64  RNRGREGGRAHSDVVFGANTTVLATRRWVGLEIDSVPGDEGQR 106


>09_04_0078 +
           14379720-14379786,14379903-14379974,14381093-14381497,
           14382835-14382911,14383016-14383135,14383227-14383997,
           14384933-14385146,14385269-14385735
          Length = 730

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 180 ILSGDKRTVSAEMRWISIKYPRQPGSEPSR 91
           ++ G   TV A  RW+ ++    PG+E  R
Sbjct: 77  VVVGANTTVLATRRWVGLEIDSVPGNEGQR 106


>12_02_0061 -
           13063434-13063525,13063679-13064566,13064912-13064960,
           13065059-13065330,13065422-13065797
          Length = 558

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 94  RWLAPWLPGVLYTYPAH 144
           RW+ P+ PG+L  Y  H
Sbjct: 328 RWVVPYNPGLLMRYNCH 344


>02_05_0430 -
           28923784-28923830,28923931-28924341,28924552-28924963,
           28925000-28925542,28925790-28925884,28926003-28927033,
           28927304-28927452,28927483-28927523,28927594-28928206
          Length = 1113

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 94  RWLAPWLPGVLYTYPAH 144
           RW+ P+ PG+L  Y  H
Sbjct: 858 RWVVPYNPGLLMRYNCH 874


>02_04_0536 + 23730396-23731736
          Length = 446

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 GCLGYFILIQRISALTVRLSPLNIPGA 190
           GCLGY   +   +A+++    LN PGA
Sbjct: 391 GCLGYLPSMVAAAAISIARWTLNPPGA 417


>02_03_0053 -
           14475106-14475126,14475171-14475512,14475969-14476099,
           14476198-14477230,14477495-14477702,14477761-14477807,
           14477906-14477971,14478644-14478804,14478985-14479118,
           14479244-14479452
          Length = 783

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 94  RWLAPWLPGVLYTYPAH 144
           RW+ P+ PG+L  Y  H
Sbjct: 309 RWVVPYNPGLLMRYNCH 325


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 94  RWLAPWLPGVLYTYPAH 144
           RW+ P+ PG+L  Y  H
Sbjct: 796 RWVVPYNPGLLMRYNCH 812


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,308,825
Number of Sequences: 37544
Number of extensions: 59765
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)