Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F17
         (229 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   3.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   3.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 225 TEYKNRGLLS 196
           T+Y NRGLLS
Sbjct: 204 TDYFNRGLLS 213


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 97  WLAPWLP 117
           W+ PWLP
Sbjct: 542 WIHPWLP 548



 Score = 19.0 bits (37), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 3/13 (23%)
 Frame = +1

Query: 85  FFPRW---LAPWL 114
           FFP+W   LA WL
Sbjct: 650 FFPKWLQVLALWL 662


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 225 TEYKNRGLLS 196
           T+Y NRGLLS
Sbjct: 80  TDYFNRGLLS 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,885
Number of Sequences: 438
Number of extensions: 583
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)