Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F14
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.40 
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   1.6  

>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 237 RTPEASRFQSVNAGAL*TQILGNPKKC*IMPGRLAAVKGLQMGGLDIISVTDSTHVS 407
           R P   RF+S+  G+  TQ +     C + PG   A+ GL  GG     V +  +V+
Sbjct: 44  RRPRIGRFKSLAYGSALTQTIIVSWVCFLCPGMFNALSGLGGGGEVNADVANDANVA 100


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 427 LALGGFHDTCVLSVTDMISRPPICRPFTAAK 335
           L   GF D C++  TD  SR P   P  A K
Sbjct: 360 LTFDGFQDYCLMCGTDFTSRIPKIGPVRALK 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,398
Number of Sequences: 5004
Number of extensions: 38953
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)