Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F14
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0496 - 18328875-18328907,18329056-18329106,18329562-183296...    29   1.6  
02_04_0427 - 22809481-22810335                                         28   5.0  
03_06_0722 - 35751490-35754357                                         27   6.6  
12_01_1004 + 10166699-10166701,10167303-10167371,10167665-101680...    27   8.8  
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    27   8.8  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   8.8  

>10_08_0496 -
           18328875-18328907,18329056-18329106,18329562-18329690,
           18330491-18330524,18331252-18331280,18331801-18332945,
           18333003-18333353,18334617-18334893
          Length = 682

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 TERRNESEGGRSPSAQGGWGRDLDR-GSRTPEASR 257
           T  R  + GG  PSAQGG  +DL R G    E +R
Sbjct: 230 TRARTRARGGGVPSAQGGTTQDLGRAGGSGTEGAR 264


>02_04_0427 - 22809481-22810335
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 321 IMPGRLAAVKGLQMGGLDIISVTDSTHVSWNP 416
           + PG +  VK L  G  DI+ V D+T +S  P
Sbjct: 90  LAPGFMGPVKNLASGPNDILCVPDATDLSLRP 121


>03_06_0722 - 35751490-35754357
          Length = 955

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -3

Query: 258 NETPRECESLDRDLGPILPERTASVRLHFRCAFQFYLIKSTQ*LAHMLDSLVLAI 94
           +E+  +  ++D+DL P+L E+ A   LH R     + I STQ   + +D++ + I
Sbjct: 719 SESGTDPNNVDKDLIPVLVEKVALPILHHR-IMHCWDILSTQRTKNAVDAINMVI 772


>12_01_1004 +
           10166699-10166701,10167303-10167371,10167665-10168045,
           10168674-10168761,10168998-10169230
          Length = 257

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 350 FYSSQTTRHNLTFFRVPKNLC 288
           ++S  T RHNL    + KN+C
Sbjct: 55  YWSKLTKRHNLDIMHIEKNIC 75


>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 165 AFQFYLIKSTQ*LAHMLDSLVLAIITECRRWETKTIRTSILSQMRTEGRI 16
           A +F+L+ S+Q L  M+  +   ++ +   WE  +   S+LS + +  R+
Sbjct: 651 ASRFFLLYSSQILGFMIAVMFFGLMRQSSAWEHDSSVPSVLSAIESNLRL 700


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 276  LHSLIGNETPRECESLDRDLGPI 208
            LH L  +E  +EC SLD +LG +
Sbjct: 1557 LHELNNHEILKECHSLDNNLGEL 1579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,790
Number of Sequences: 37544
Number of extensions: 263618
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)