Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_F13
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 135 3e-33
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 1.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 3.1
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 3.1
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 5.4
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 7.2
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 25 7.2
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 7.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 9.5
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 135 bits (327), Expect = 3e-33
Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Frame = +2
Query: 2 NKGMAFTIEERQTLGIHGLLPARVKSQEEQVQLCKLSIERY-ENPLNKYIYLMGLLDRNE 178
NK AFT EERQ I LP V++ ++QV C + + PL K +YL L N+
Sbjct: 25 NKDTAFTPEERQKFEISSRLPPIVETLQQQVDRCYDQYKAIGDEPLQKNLYLSQLSVTNQ 84
Query: 179 HLFYRFVGENVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI--NDKGHVYDVLKNWP 352
LFY + +++ EM+PI+YTPT G A ++F +YR P G ++ I ND ++ L +
Sbjct: 85 TLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDLSYIKQQLSEFG 144
Query: 353 ETD-VRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALAGIKPHQCLPITLDVGTNTQ 529
++D V I++TD E ILG+GD G G+ I V K L T AG+ P++ LPI LDVGTN +
Sbjct: 145 KSDSVEYIIITDSEGILGIGDQGVGGVLISVAKGHLMTLCAGLDPNRFLPIVLDVGTNNE 204
Query: 530 S 532
+
Sbjct: 205 T 205
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 452 LVYPQECPYRKRLDHPNR 399
+VY +EC Y KR+ H NR
Sbjct: 28 MVYGEECRYVKRVKHDNR 45
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 200 GENVAEMMPIVYTPTVGLACQKFGL 274
G+ ++ MM V P+V LACQ +G+
Sbjct: 4072 GKFMSSMMSTVSLPSVRLACQLYGV 4096
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 287 PRGLFITINDKGHVYDVLKNWPETDVRA 370
P GL+I + +K +D + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 483 GLMPASAVYSASLPTGMPIP 424
GL+ SA + A++PTG+ +P
Sbjct: 394 GLLLTSATFGAAIPTGIIVP 413
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = -3
Query: 310 DSNEKTARSAIHQPELLTGETDRRRIHYGHHLSNVLTDETIE*ML 176
D N + + + +P L + +H+ H + N+L T+ ML
Sbjct: 163 DPNSEEEDTFMQRPFLYPASSYNSALHWSHRIPNILNPSTLCDML 207
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 537 NIDCVFVPTSSVMGRH*CGLMPASAVYSASLPT 439
N+ VFVP+ + +GR CG+ + V SAS+ T
Sbjct: 74 NVPYVFVPSKAALGRA-CGV--SRPVISASITT 103
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 360 SVSGQFFKTS*TCPLSLIVMKRPRG-RRYTSPN 265
S+SG F T+ TCP+++ + + + R SP+
Sbjct: 178 SISGSLFDTNYTCPVNINGLSKQKSVRELKSPS 210
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 29 ERQTLGIHGLLPARVKSQEEQVQLCKLSIERYENPLNKYIYLMGLLD 169
+RQT IHG + V EE L + YE PL + + GLLD
Sbjct: 117 QRQT--IHGASSSLVIEVEENGHLSNMQGSLYETPL-RILDAPGLLD 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,398
Number of Sequences: 5004
Number of extensions: 48174
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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