Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F13
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   228   2e-60
U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  228 bits (557), Expect = 2e-60
 Identities = 106/180 (58%), Positives = 132/180 (73%), Gaps = 2/180 (1%)
 Frame = +2

Query: 2   NKGMAFTIEERQTLGIHGLLPARVKSQEEQVQLCKLSIERYENPLNKYIYLMGLLDRNEH 181
           NKGMAF++ ERQ LG+HGLLP    ++E+Q       + +  + L KYI L  L DRNE 
Sbjct: 61  NKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYIQLDSLQDRNEK 120

Query: 182 LFYRFVGENVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITINDK--GHVYDVLKNWPE 355
           L+YR + +NV E+MPIVYTPTVG ACQ FG +YR P+GL+ITIND     ++ +L NWP 
Sbjct: 121 LYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDNSISKIHQILANWPT 180

Query: 356 TDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALAGIKPHQCLPITLDVGTNTQSM 535
            +VRAIV+TDGERILGLGDLG  G+GIPVGKLALY ALAGI+P  CLP+ LDVGT+   +
Sbjct: 181 ENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVALAGIRPEWCLPVILDVGTDNSEL 240


>U50072-1|ABP49527.1|  378|Caenorhabditis elegans Hypothetical
           protein K06B9.2 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 359 DVRAIVVTDGERI-LGLGDLGACGMGIPVGKLALYTALAGIKPHQ 490
           +V AIV+  G+   LG   L    +GI   K+AL  ALAG + HQ
Sbjct: 8   EVCAIVLAGGQATRLGSNSL----LGIQAAKIALLQALAGEREHQ 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,776
Number of Sequences: 27780
Number of extensions: 280789
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)