Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F12
         (471 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001593-1|AAN71348.1|  750|Drosophila melanogaster RE27538p pro...    32   0.45 
AE014296-790|AAF47859.2|  750|Drosophila melanogaster CG15005-PA...    32   0.45 
X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin ...    27   9.7  
L07933-1|AAA28666.1|  621|Drosophila melanogaster lamin C like p...    27   9.7  
AY095046-1|AAM11374.1|  621|Drosophila melanogaster LD31805p pro...    27   9.7  
AE014134-2738|AAF53546.3| 1700|Drosophila melanogaster CG31738-P...    27   9.7  
AE013599-1908|AAF58237.1|  621|Drosophila melanogaster CG10119-P...    27   9.7  

>BT001593-1|AAN71348.1|  750|Drosophila melanogaster RE27538p
           protein.
          Length = 750

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 150 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 275
           +P P +SQP   PS +Y+  +  P+      P +P   Y+ P
Sbjct: 339 HPPPSYSQPPQHPSSSYDQPAQHPSSSYDQPPKHPSSSYEQP 380



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 150 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 275
           +P   + QP   PS +YE     P+      P +P   YD P
Sbjct: 361 HPSSSYDQPPKHPSSSYEQPPQHPSSSYDQPPQHPSSSYDQP 402



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 150 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 275
           +P   + QP+  PS +Y+     P+      P +P   YD P
Sbjct: 350 HPSSSYDQPAQHPSSSYDQPPKHPSSSYEQPPQHPSSSYDQP 391


>AE014296-790|AAF47859.2|  750|Drosophila melanogaster CG15005-PA
           protein.
          Length = 750

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 150 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 275
           +P P +SQP   PS +Y+  +  P+      P +P   Y+ P
Sbjct: 339 HPPPSYSQPPQHPSSSYDQPAQHPSSSYDQPPKHPSSSYEQP 380



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 150 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 275
           +P   + QP   PS +YE     P+      P +P   YD P
Sbjct: 361 HPSSSYDQPPKHPSSSYEQPPQHPSSSYDQPPQHPSSSYDQP 402



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 150 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 275
           +P   + QP+  PS +Y+     P+      P +P   YD P
Sbjct: 350 HPSSSYDQPAQHPSSSYDQPPKHPSSSYEQPPQHPSSSYDQP 391


>X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin C
           protein protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 154 GFAITTWSLLPSDGHHYCPPRELCLRQPWPI 62
           G ++T WS+     H   PP  L +++ WP+
Sbjct: 531 GASVTIWSVDAGTAHD--PPNNLVMKKKWPV 559


>L07933-1|AAA28666.1|  621|Drosophila melanogaster lamin C like
           protein protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 154 GFAITTWSLLPSDGHHYCPPRELCLRQPWPI 62
           G ++T WS+     H   PP  L +++ WP+
Sbjct: 531 GASVTIWSVDAGTAHD--PPNNLVMKKKWPV 559


>AY095046-1|AAM11374.1|  621|Drosophila melanogaster LD31805p
           protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 154 GFAITTWSLLPSDGHHYCPPRELCLRQPWPI 62
           G ++T WS+     H   PP  L +++ WP+
Sbjct: 531 GASVTIWSVDAGTAHD--PPNNLVMKKKWPV 559


>AE014134-2738|AAF53546.3| 1700|Drosophila melanogaster CG31738-PB,
           isoform B protein.
          Length = 1700

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 69  HGCRKQSSRGGQ*WCPSDGNSDHVVIANPDPFFSQPSNGPSG 194
           HG ++Q  +  Q   PSDG S +  +    P   Q +  P G
Sbjct: 40  HGPQQQQQQQQQQHSPSDGGSSNCSLPASPPLLQQTATPPQG 81


>AE013599-1908|AAF58237.1|  621|Drosophila melanogaster CG10119-PA
           protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 154 GFAITTWSLLPSDGHHYCPPRELCLRQPWPI 62
           G ++T WS+     H   PP  L +++ WP+
Sbjct: 531 GASVTIWSVDAGTAHD--PPNNLVMKKKWPV 559


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,680,970
Number of Sequences: 53049
Number of extensions: 383281
Number of successful extensions: 989
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)