Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F11
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.35 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   0.80 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    28   1.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   4.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   7.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.9  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 423 HVPGNRMPCNGDTKTPKCQKNCESSYNVPFKKDKRYGKH 539
           HVPGN  P     K+P  QK+   +  +P    + +  H
Sbjct: 80  HVPGNNSPLQTPQKSPPRQKHTAPATPIPVSASRHHKPH 118


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 12  HQNINGSIEDDNILKLPKVTHDAELIANL--PENFDPRDKWPECPTLNEIRDQGSCGSCW 185
           +Q+   S  ++++ K P +++  + I  L  P++ D    WP    L  +   GS   C 
Sbjct: 28  YQSSVSSELEESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCA 87

Query: 186 AFGA 197
            FG+
Sbjct: 88  GFGS 91


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -3

Query: 226 MHTRSVIASTAPKAQQLPHDP*SLISFNVGHSGHLSLGSKFSGRFAISSAS*VTLGNFNI 47
           M + S I S+ P   QLP  P + +SF       + LG  FS    +SS S  T  N   
Sbjct: 137 MTSMSSITSSTPTPSQLPVRPSTSLSF----FDDIPLGPSFSAETILSSLSISTSNNAMS 192

Query: 46  LSSSMLPLI 20
            ++   PL+
Sbjct: 193 KTTPAPPLV 201


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 288 ICGLGCNGGMPTLAWEYWKHVGLVSGG 368
           +C LG N     + + YWK  G  + G
Sbjct: 194 LCNLGVNNEKKFIGFRYWKDPGAFNNG 220


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 367 PPDTSPTCFQYSQAKVGIPPLQPR 296
           PP   PT   YSQ ++G P L+P+
Sbjct: 438 PPVPHPTSL-YSQIRIGCPYLKPK 460


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 426 RDVHTVEFRKVGNLGLSYNCHPIQAQRASNIPK 328
           RD HT  F      G++Y  H ++    + IPK
Sbjct: 886 RDDHTFSFDYKLKKGVNYQSHGLKVAEMAGIPK 918


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 245 LSCIRVNAYSI--CHRFHRSESPAAAARSLIPNLVQCRAFGPLIPRVEILWKVC 90
           ++C+ V  +    CHR   +E+  +    LIP+L    A  P IP +     +C
Sbjct: 1   MTCVNVCFFLFPPCHRNKITEADKSLVDLLIPSLCCSLAVFPSIPLINTHSNLC 54


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 375 NSSQGCRPYEIPPCEHHVPGNRMP 446
           N  + C P+  PP +HH P  R P
Sbjct: 155 NHVRSCPPF--PPTQHHHPHTRPP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,030
Number of Sequences: 5004
Number of extensions: 46446
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)