Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F07
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   0.66 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   1.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   1.5  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   6.1  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.1  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   8.1  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   8.1  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 151  IQKVEVDKLVTYYEYTYVNISASVHMNEVQTFINSNINAVFSGQLVYDKESVLVQQARLN 330
            ++  EV    T     +VN++ ++ +  ++  INS    +FS Q+ Y+K    +Q+   +
Sbjct: 1438 LKGAEVSPQPTGQSLQHVNLAHAIELKALKDQINSEKAKMFSVQVQYEKREQELQKRIAS 1497

Query: 331  HKKFN 345
             +K N
Sbjct: 1498 LEKVN 1502


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 145  VAIQKVEVDKLVTYYEYTYVNISASVHMNEVQTFIN 252
            V++ + ++D    Y+E  YV+ S S+    ++T +N
Sbjct: 1356 VSVGQAKLDNFTVYFENVYVSASLSILRRFIETSLN 1391


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -2

Query: 402 QEKLNLHLLGNFTCNLDPNVEFL--MV*SSLLN*HAFFIIDKLT*ENSINI 256
           QE++ L +L NFTC  + +V+FL  MV   LL   A  +++KL  +N I I
Sbjct: 528 QEQM-LQVLRNFTCQKEESVDFLLKMVPMELL---AKILLEKLESKNPILI 574


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 174 IGYLLRIYLCEHQCVCSYERSSNIY*FKY*CCFLRS 281
           IG+L+ I+L   +CV   +    +Y F   C  LRS
Sbjct: 230 IGFLITIWLHHRRCVVYMKVCVAVYVFDRGCRMLRS 265


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 229 NEVQTFINSNINAVFSGQLVY 291
           +EV    +S +++VFSG LVY
Sbjct: 280 DEVDAIFSSEMSSVFSGGLVY 300


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 52   KLDQLMLFGSVQGQMEP 2
            KL +L++FGS+ G +EP
Sbjct: 1033 KLGKLLVFGSIFGYLEP 1049


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 409 KYDSRGFEIPLHVNSENFFLLNHFIH 486
           KY+  G  +P+     N+F L+HFIH
Sbjct: 667 KYEDHGKNLPI-----NYFGLDHFIH 687


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 124 LPCIQEDVDAIMRTS*ELASRSCRKLDQLMLFGSVQGQMEP 2
           L  + E VD ++RT+ +  ++SC++++  +     + QM P
Sbjct: 35  LRAVDEVVD-VLRTALQEKNQSCKRIESFVANHQPESQMSP 74


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 31  TALTDP--AFYMIWKRVLKMFSLLHQ-RLPEYKEEELALPDVAIQKVEVDKL 177
           T +TDP  A Y       + +   H+ RL EY+E ELA  +   ++ E++KL
Sbjct: 92  TFITDPKHADYAAESGASRNYEPWHEKRLQEYEENELAERNDIPEEDEMEKL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,039
Number of Sequences: 5004
Number of extensions: 33872
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)