Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F03
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   0.67 
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   1.2  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   2.0  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   2.7  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   2.7  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   3.6  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   3.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   3.6  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    24   6.3  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 200 EPSRMDPNSEWLPNSI 247
           EP  +DPNS W PN +
Sbjct: 315 EPEGLDPNSWWYPNGL 330


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 270 NYNCCPKGIEFGNHSELGSIRDGSRPEICSIRS 172
           +YN  P  + FGNH +LG   D SR E+  I S
Sbjct: 287 DYNV-PFAVNFGNHDDLG---DLSREELAKILS 315


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 178 DGTNLRTGTVPNGSQFRMVTEFNT 249
           +G   +T TVP   QF  V EFN+
Sbjct: 68  EGEKTKTETVPTRKQFPKVGEFNS 91


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 62  NGYVRASYTGFIASQATCMNIKIQKADRKQREFIY 166
           + Y+R+ Y+ F     T  N+ IQK   K+++++Y
Sbjct: 181 DAYLRSIYSSF----GTLQNVVIQKDISKEKKYVY 211


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +2

Query: 29  KFVIYYLYII*NGYVRASYTGFIASQATCMNIKIQKA-----DRKQREFIY*QERMEQIS 193
           K  + YL+ I N  ++ +Y+G++     CM + I K      D K +E  Y       I+
Sbjct: 543 KTFVTYLHRILNA-IKETYSGYLLLTVLCMRLNIIKTPSFTLDEKIQESYYMAHYRPLIN 601

Query: 194 GREP 205
            R+P
Sbjct: 602 LRQP 605


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 132 KRQIENNANLFIDKNGWNKSQ 194
           K + ENN ++ I+ +G+NK Q
Sbjct: 283 KMEKENNLDIMIEASGFNKKQ 303


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 302 LHLIRKNEGYKIIIVVQRVLN 240
           L LI+  + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 189 ICSIRSCQ*INSRCFLSAFCILI 121
           + SIR+C     +CF  AFC ++
Sbjct: 225 LVSIRTCMLNAKKCFTDAFCEIL 247


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 PEWIPIQNGYRIQYPLDNNYNF 272
           PE+  + N Y+++Y LD+   F
Sbjct: 73  PEFKALANSYKLKYGLDSGIRF 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,514
Number of Sequences: 5004
Number of extensions: 28997
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)