Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_F03
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 1.3
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 27 3.1
09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303... 27 4.1
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 27 4.1
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891... 26 5.4
09_04_0585 - 18720407-18720693,18721411-18721513,18721642-187222... 26 7.1
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 26 7.1
06_03_0871 - 25562767-25563509,25563889-25565776 26 7.1
01_03_0192 + 13618129-13618393,13618652-13618721,13619052-136192... 25 9.4
01_01_1004 - 7944214-7944227,7944641-7945769 25 9.4
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 19 LCYKICHILFIYNLKWIRARFLYWVYSQ 102
LCY+ +L LKW+ +RFL+ Y Q
Sbjct: 1350 LCYERAELLGDAYLKWVVSRFLFLKYPQ 1377
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 120 ILRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 254
I+R+K I+N + D NG+ S+ + IP+Q Y YP+
Sbjct: 885 IVRFKTDIDNQGVFYSDLNGFQMSRRQTYDK-IPLQGNY---YPM 925
>09_04_0465 +
17827224-17827997,17828711-17829024,17829949-17830397,
17830641-17830756
Length = 550
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 2 ASLSCICATKFVIYYLYII*NGYVRASYTGFIA 100
A+ + A+ F+I+YL+ G+V A Y+ F+A
Sbjct: 441 AAFCVLEASYFLIHYLFASQTGHVGALYSAFLA 473
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 135 RQIENNANLFIDK--NGWNKSQDGNRPEWIP 221
+ IE++ NLF K WNK +DGN ++P
Sbjct: 309 KTIEDSWNLFHKKFVELWNKHKDGNGEAYLP 339
>03_06_0732 -
35788417-35788485,35788776-35788871,35788963-35789148,
35789898-35789959,35790063-35790304,35790418-35791517
Length = 584
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 173 ERMEQISGREPSRMDPNSEWLPNSIPF 253
E+ + GR PS P+S W+P S+ F
Sbjct: 481 EQQACMLGRAPSPRSPSSPWMPFSMLF 507
>09_04_0585 -
18720407-18720693,18721411-18721513,18721642-18722263,
18722602-18722689,18722815-18722892,18723116-18723191,
18723697-18723755,18723907-18723964,18724070-18724216
Length = 505
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +3
Query: 120 ILRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 248
+L Y ++ NN +++ +NG + + + P +++G+RI++
Sbjct: 392 LLLYTKRRYNNPIIYVTENGIAEGNNKSLPITEALKDGHRIEF 434
>09_02_0250 +
6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 198 GNRPEWIPIQNGYRIQYPLDNNYN 269
G RP PI+ GYR + NN+N
Sbjct: 232 GYRPPLAPIRQGYRHRSSNSNNHN 255
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 136 LLYLNIHAGRLTGYKPSIRSAHVSISNYI*IIYDKFCST 20
L +LNI + +LTG P+ SA V ++ + + ++ F T
Sbjct: 265 LRFLNISSNKLTGALPTELSAVVPANSTVDLSHNNFTGT 303
>01_03_0192 +
13618129-13618393,13618652-13618721,13619052-13619220,
13619385-13619495,13619742-13619834,13619912-13620097
Length = 297
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 260 VVQRVLNSVTILNWDPFGTV 201
V+QR+ N++T+ + P GTV
Sbjct: 195 VIQRISNNLTVCHKQPIGTV 214
>01_01_1004 - 7944214-7944227,7944641-7945769
Length = 380
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 230 ILNWDPFGTVPVLRFVP 180
++ DPF P LRFVP
Sbjct: 209 LITCDPFAPAPALRFVP 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,650,388
Number of Sequences: 37544
Number of extensions: 165482
Number of successful extensions: 373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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