Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F02
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    37   0.002
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   2.1  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   2.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   6.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   8.6  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 401 PLHNQVGGHTRLLVLNDSTVIKPLNTRELHFYQNIP---EDIQSFVPRY 538
           P  +QVGGHT     +   V KPL   E  FY+ I     ++  F+P+Y
Sbjct: 315 PFKHQVGGHTAFFRFSKRAVCKPLTRNENTFYETIEACHPELLPFIPKY 363


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 171 FIVNRVTH-WDFTTSGLKEVYCQVDSGGGGSAEVMVYSLGWG 293
           +I N   H W    S  ++ +  VDSG     E ++Y  GWG
Sbjct: 183 WIWNAEDHVWTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWG 224


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 164 NRFYREPCYTLGFHHERAQRSLLSSGQRWRRLCR 265
           +R Y+E CY+LG+  E    SL+    RW +L +
Sbjct: 384 SRRYKEFCYSLGYSPEGTNSSLIV--YRWPQLTK 415


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 405 YTIRWGV-IPGYWCSTTAPLSSRSILASCISTRTFQK 512
           + + WG+ +   W S     SS S+LAS +  R ++K
Sbjct: 818 FFLPWGIYLNPMWASAAMMFSSLSVLASSLLLRRWKK 854


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 230 LSSGQRWRRLCRSNGVLSWLGYGGAG 307
           LS  + W  +C +NG+L   G+G  G
Sbjct: 356 LSYHKAWHLVCSANGILVPGGFGSRG 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,022
Number of Sequences: 5004
Number of extensions: 51798
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)