Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_F02
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical ...    43   2e-04
Z81072-2|CAB03023.2|  332|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    28   6.0  

>AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.6 protein.
          Length = 323

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +2

Query: 401 PLHNQVGGHTRLLVLNDSTVIKPLNTRELHFYQNIPEDIQSFVP 532
           P  +QVGGHT    L +  ++KP   RE+ FYQ +P+ ++S  P
Sbjct: 24  PFDHQVGGHTPFTSLPNGHLLKPCEEREILFYQKMPKILKSIAP 67


>Z81072-2|CAB03023.2|  332|Caenorhabditis elegans Hypothetical
           protein F30A10.3 protein.
          Length = 332

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 410 NQVGGHTRLLVLNDSTVIKPLNTRELHFYQNIPEDIQSFVPRY 538
           +QVGGH  +L+ N   V KP N RE+ FY+ +  +++ F P +
Sbjct: 8   HQVGGHFGILLCNGH-VAKPSNLREMAFYKVMNSELKHFSPAF 49


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
 Frame = +3

Query: 195 WDFTTSGLKEVYCQVDSGGGGSAEVMVYSLGWGM--------GEPERRGADRKRAQPSAV 350
           W  TT   +  Y   DSG  G +  M+Y  GW            PE    D++R+ P A+
Sbjct: 27  WTHTTG--QSQYYHTDSGATGLSNPMLYGSGWYQPPNYNNYPAAPEHNVVDQQRSPPDAM 84


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 321 PRRAVPAPPYPSQESTPLLRQS 256
           P RA PAPP P+ +  P ++Q+
Sbjct: 319 PTRAAPAPPKPAPQQAPPVQQN 340


>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 372 LAKVAGVRRQTAGRACDPRRAVPAPPYPSQESTPLLRQSR 253
           +A   G  ++ A R  D   ++P P +P+Q+S P  +QSR
Sbjct: 141 IASQKGSTKRVAPRK-DYAPSIPLPEHPAQQSAPPTQQSR 179


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 372 LAKVAGVRRQTAGRACDPRRAVPAPPYPSQESTPLLRQSR 253
           +A   G  ++ A R  D   ++P P +P+Q+S P  +QSR
Sbjct: 141 IASQKGSTKRVAPRK-DYAPSIPLPEHPAQQSAPPTQQSR 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,590,447
Number of Sequences: 27780
Number of extensions: 312911
Number of successful extensions: 1039
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)