Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E24
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    28   0.89 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   2.7  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   3.6  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   3.6  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.3  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 161 ITMSIPKFHKHKSIYFNLVRL*IV*FIRHVNKENIFDKFTALPPCSHFQLQ 9
           + +++ K H      F L  L  +  +RH   ENI      LPP S+ +L+
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTLREIKLLRHFRHENIISILDILPPPSYQELE 113


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 315 SKSILSADAKEWYPPNYTHQVTPTYTSDLTHNR 413
           +KS+    A+   P N + QV+ ++ S + HNR
Sbjct: 166 AKSLAIPKARSSLPENSSEQVSSSFNSRVAHNR 198


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 438 DLGQRNEEVYYGLGQKYTLVSLGEYSL 358
           D+ +++   +YGLGQ Y ++ +  Y+L
Sbjct: 400 DVNRKDYRAWYGLGQTYEVLDMHFYAL 426


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +3

Query: 303 TVEASKSILSADAKEWYPPNYTHQVTPTYTSDLTHNRLPRFSVQDRLRQAQDQYP 467
           +V+  + ++  + +  Y P+  ++ T  Y   ++ N  P F V   L    D +P
Sbjct: 419 SVDPDRMLVKKEDQTRYVPDVLYRYTDKYGKQVSENAKPAFPVSFLLVTLTDGFP 473


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 243 QQPDNQPRALRQPKSLTDDSTVEASKSILSADAKE 347
           +QP N     +  K+L  DS +E+ KS++S   K+
Sbjct: 790 KQPPNSESKGQSKKTLLHDSNMESLKSVISRIVKK 824


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 124 VYILISYACKSFNLFDT*TKKIFSIS 47
           VY++IS  CKS    D   K+IFS +
Sbjct: 97  VYLIISSQCKSILEDDAVEKEIFSFT 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,289
Number of Sequences: 5004
Number of extensions: 33254
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)