Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E24
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0952 + 7469812-7470020,7471013-7471448                           31   0.38 
05_03_0685 + 16992899-16993570                                         27   6.3  

>01_01_0952 + 7469812-7470020,7471013-7471448
          Length = 214

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 260 LIVGLLPPAASAPRSTADFTVVHSNNSFSIKIF---ITMSIP 144
           L + LLPPAA     T  +T VH+ + F ++ +   + MS P
Sbjct: 13  LPLALLPPAARGTEETPQYTTVHAESDFEVRRYRDTVWMSAP 54


>05_03_0685 + 16992899-16993570
          Length = 223

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 311 FNCRIISQTFRL-TKCPWLIVGLLPPAASAPRST 213
           F+ R +   F+L + CP    G+LPPA + P  T
Sbjct: 159 FHARCVDMWFQLHSTCPLCRAGVLPPAPAPPCPT 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,961,727
Number of Sequences: 37544
Number of extensions: 190359
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)