Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E21
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   0.58 
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    26   2.3  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   3.1  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 104 ASQATCMNIRNKRQVDNSPEELEDRYALNRPNNVR 208
           +S A    I++   VD+  EEL ++ A NR +NV+
Sbjct: 484 SSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVK 518


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 322 VARSGATAAANINYLYYYFRTQRRWSNN 405
           + R+G T A + N  Y   RT   WSN+
Sbjct: 13  IQRTGETTAESTNSWYNRLRTSMPWSND 40


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 93  RIRIGHSLSI-LNGNNLKNECDQFL*HGTD 7
           +IR G ++ I L+  NLKN CD FL +  D
Sbjct: 319 KIRKGQAVQIILHSVNLKNVCDLFLRYTRD 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,425
Number of Sequences: 5004
Number of extensions: 30926
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)