Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E16
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   0.59 
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    25   4.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   7.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   7.3  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.6  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    24   9.6  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 26  RTNQPTMVYESDFYTTRRPYR 88
           R N P + Y+  FY TR PYR
Sbjct: 356 RENSPYLPYKGVFYNTRPPYR 376


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 285 DLNRPRLSKTRPVASALIQPL*SSVADNVHHISF 386
           D +RPR  +  P   A++ PL  ++AD V  + +
Sbjct: 12  DKSRPRRFRCVPKDKAILNPLAKNIADVVRDLGY 45


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 358 SQITSTTFPSTTNQRRSSPDAVTSRACTT 444
           ++ TS+T  ++T    SSP   TS +CTT
Sbjct: 89  TESTSSTSSASTTGSSSSPLPSTSTSCTT 117


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -1

Query: 278 SHRQLT---QRELGGGGT-RCGPAHGVLRR 201
           S RQ+T    R  GG G   CG  HGVL R
Sbjct: 180 STRQVTIVPNRHWGGNGAIGCGVGHGVLHR 209


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 269 QLTQRELGGGGTRCGPAHGVLRRDVRALSPRDEV 168
           +L+  EL GG       H +    ++A+ P DEV
Sbjct: 364 ELSATELSGGARIAFVFHEIFSNGIQAIDPFDEV 397


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 113 VPPLRCSCSCTDGGSCRSHS 54
           V P+ C C C D   C S +
Sbjct: 17  VAPVTCQCECWDHNLCSSQA 36


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 335 QRGCDGSRLRKPWSIQI*RSHRQLTQ 258
           QRGCDG RL    S  I  + + L Q
Sbjct: 232 QRGCDGGRLYYDGSSMIFANGKMLAQ 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,717
Number of Sequences: 5004
Number of extensions: 30692
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)