Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E14
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0106 + 788967-789555,790139-790162,790339-791411                 29   1.7  
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780...    29   3.1  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    27   7.1  
10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885           27   7.1  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    27   7.1  
02_05_0819 - 32014236-32016059                                         27   9.3  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    27   9.3  

>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 337 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 510
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 511 TPGQN 525
             GQN
Sbjct: 491 FTGQN 495


>04_04_0624 +
           26676765-26676879,26676955-26677093,26678012-26678083,
           26678174-26678317,26678402-26678530,26678819-26678938,
           26679015-26679076,26679937-26680170,26680259-26680485,
           26680551-26680683,26680787-26680944,26681139-26681351,
           26681482-26681730
          Length = 664

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 426 RSQEDLDNSISGNIGLNVDGNTERLVVES-WLTNLEVVWVTSL 301
           R     +NS  GN    VDGN ++   +  WL  LEV+   SL
Sbjct: 256 RPDNQCENSQKGNESSRVDGNQQKSFQQPLWLLILEVITAISL 298


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +1

Query: 142 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 321
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 322 FKVRQPRLNHKPFSVTIDVKSDIAT 396
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885
          Length = 489

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +1

Query: 349 HKPFSVTIDVKSDIAT-----DAVIKIFLGPKYNDXGFPITLEENWHKFYEL 489
           HK  SV++D+K+ +       D + KI   P+Y    F +TL  NW+   EL
Sbjct: 218 HKSGSVSVDIKASVLGRFWLFDCLEKI---PEYEQAMFLMTLWRNWYVRNEL 266


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +1

Query: 142 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 321
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 322 FKVRQPRLNHKPFSVTIDVKSDIAT 396
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>02_05_0819 - 32014236-32016059
          Length = 607

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 310 YPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIK 411
           YP     R  +   K  ++T+D K  +A DAV+K
Sbjct: 85  YPLGMGRRDEKGGSKILALTVDAKGSVAFDAVVK 118


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +1

Query: 232 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIAT 396
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 397 DAVIKIFLGPKYNDXGFP 450
           D  +K +    Y   G P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,706,270
Number of Sequences: 37544
Number of extensions: 253602
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)