Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E13
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   3.9  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   5.1  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   6.8  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.0  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 274 SPVSVVNVLPAKPDM*EPRLCPIR*IASGLIPPFAIA 164
           +P+SV + +PA P +   RLC    IAS L PP A++
Sbjct: 133 APISVKSSIPAIPRVTFERLCYESAIASNL-PPNALS 168


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 TLWSRRLLPEQRIPAA 460
           T WSRRLL  QR+P A
Sbjct: 410 THWSRRLLTFQRLPRA 425


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 188 THTALCHSREDFTELLSYEPNVRGRMEVQPTDERAAVQ 75
           THT +  S  + + LLSY  N  G    +P +   +++
Sbjct: 179 THTQVADSATESSPLLSYTGNHNGAGTSKPVNNHGSIE 216


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 154 SPSFSPMNRTYVVEWRYSQRMRELPSRAK 68
           S  +  ++RTYV   R   +  ++PSR K
Sbjct: 324 SNCYRALDRTYVQNCRIKLKFHDIPSRTK 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,293
Number of Sequences: 5004
Number of extensions: 43471
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)