Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_E13
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412... 36 0.020
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 34 0.079
10_08_0477 - 18188280-18188490,18188572-18188748,18189141-181893... 31 0.42
07_03_1648 - 28382520-28382963,28383623-28383868 29 3.0
04_04_0967 + 29782460-29783725 28 3.9
12_01_0562 - 4555384-4555673,4555775-4555883,4555981-4556084,455... 28 5.2
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425... 28 5.2
03_01_0619 + 4556665-4557132 28 5.2
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 27 6.8
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 6.8
02_01_0586 - 4334896-4335177,4336340-4338007 27 6.8
01_06_0372 + 28828552-28829913 27 6.8
07_03_1614 + 28152812-28153204,28153301-28153585,28153676-281539... 27 9.0
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 27 9.0
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 27 9.0
01_01_0785 - 6076089-6077615 27 9.0
>08_02_0913 +
22540078-22540166,22540280-22540420,22541151-22541281,
22542278-22542460,22542555-22543195
Length = 394
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 258 TTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTDA--KYVDVIHTDCGVY 401
TT GL + + + PAGP F ++P + TDA K VD +H G++
Sbjct: 58 TTQGGLLISEGTVVSPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIF 107
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 33.9 bits (74), Expect = 0.079
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 75 LDGSSLIRWLYLHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISG-FAGK 251
L GS W L +Y+ +++ KG ++ + + L ++L I FA
Sbjct: 571 LVGSLPTSWGQLQLLSYLNLSQNTFNDLIPDSFKGLVNLETLDLSHNNLSGGIPKYFANL 630
Query: 252 TFTTLTGLQVGRISGLDPAGPCFSNI 329
TF T L + G P+G FSNI
Sbjct: 631 TFLTSLNLSFNNLQGQIPSGGVFSNI 656
>10_08_0477 -
18188280-18188490,18188572-18188748,18189141-18189304,
18189667-18189720,18190572-18191054
Length = 362
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 513 RRRATRRDCGCTSGRGSSAAGIRCSGSSRRDHRV 412
RRR RR CG GRG A +RC ++ RV
Sbjct: 31 RRRRRRRMCGGGRGRGGGAHQVRCCAAAAPQPRV 64
>07_03_1648 - 28382520-28382963,28383623-28383868
Length = 229
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 309 PPDPVPISCRLEVRLAL*TSYQRNLICESRGCALSDESHRDSYR 178
PP P P S E R T + ++L+ RGC + D + YR
Sbjct: 12 PPSPPPPSTTSEQRKVF-TLWMKSLVLNGRGCTVYDSTGGIVYR 54
>04_04_0967 + 29782460-29783725
Length = 421
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 518 RLAVEQHGATVAARLEEAVRLLGSAVRVVVGV 423
RLA +HG VAA +R+ G A R+ V V
Sbjct: 318 RLAFAEHGLAVAAVARAVLRVSGLATRLAVNV 349
>12_01_0562 -
4555384-4555673,4555775-4555883,4555981-4556084,
4556643-4556946
Length = 268
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 222 GSHISGFAGKTFTTLTGLQVGRISGL-DP 305
G + GFAG++ GL GRI GL DP
Sbjct: 70 GVSVFGFAGESMAVKQGLLAGRIPGLSDP 98
>06_03_0442 +
20837492-20837621,20841842-20842075,20842435-20842528,
20842653-20842870,20842956-20843095,20843231-20843878
Length = 487
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 207 IGHSLGSHISGFAGKTFTTLTGLQVG 284
+G SL ISG GK TTLTG++VG
Sbjct: 216 VGLSLARTISGATGK--TTLTGVEVG 239
>03_01_0619 + 4556665-4557132
Length = 155
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 437 PEQRIPAAELPLPDVQPQSRRVALRR 514
P ++ P A PLP P RR+ LRR
Sbjct: 86 PIKKPPPAPAPLPPPSPAQRRILLRR 111
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3
Query: 195 AIHLIGHSLGSHISG------FAGKTFTTLTGLQVGRISGLDPAGPCFSNI 329
A+ L G++L S+I F+ T+ T L + G P+G FSNI
Sbjct: 551 ALSLSGNNLSSYIPNGGIPKYFSNLTYLTSLNLSFNNLQGQIPSGGIFSNI 601
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 186 SPDAIHLIGHSLGSHISGFAGKTFTTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTD 359
SPD++ + G H+SG + LT L+ + + +GP + I LK D
Sbjct: 80 SPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLD 137
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 321 SNIPAELRLKHTDA-KYVDVIHTDCGVYGLKEPCGHADYYPNSGSQQPNCLFQ 476
+ + EL+LK A + VD + GV+ LK HAD YPN ++ +CLF+
Sbjct: 148 ARVGPELQLKTFPAQRRVDFVAD--GVWALKFL--HADGYPNFYAKYQSCLFE 196
>01_06_0372 + 28828552-28829913
Length = 453
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 372 DVIHTDCGVYGLKEPCGHADYYPNSGS 452
D+I T CG P G YYP S S
Sbjct: 114 DLIWTKCGACARCSPRGSPSYYPTSSS 140
>07_03_1614 +
28152812-28153204,28153301-28153585,28153676-28153993,
28154657-28154884,28155390-28155490,28156204-28156321,
28156445-28156726
Length = 574
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 486 GCTSGRGSSAAGIRCSGSSRRDHRVP 409
GC GR S+++ + S RRDH P
Sbjct: 2 GCVHGRPSTSSPAAANASRRRDHPPP 27
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 316 QGPAGSSPDILPT*SPVSVVNVLPAKPDM*EPRLCPI 206
+GP+ SP IL VN+L A P M P + P+
Sbjct: 362 RGPSSISPHILKPDVTAPGVNILAAWPPMSSPTVIPL 398
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 193 SGLIPPFAIAARTSPSFSPMNRTYVVEWRYSQ-RMRELPSRAKML-IHIGXETIADDIEV 20
+G PP+A +P SP Y WR++Q R R K+L +I + +A + +
Sbjct: 151 AGFRPPYAGFRPGAPQQSPRLAEYRRRWRFTQHRPPRQAERFKVLSYNILADYLAQEHQF 210
Query: 19 LLSRI 5
L RI
Sbjct: 211 LYERI 215
>01_01_0785 - 6076089-6077615
Length = 508
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 189 PDAIHLIGHSLGSHISG 239
PDA HLIGH G + G
Sbjct: 105 PDAFHLIGHPFGKKLFG 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,094
Number of Sequences: 37544
Number of extensions: 334023
Number of successful extensions: 1117
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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