Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E11
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    28   0.50 
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   2.7  
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    25   2.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   3.5  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   3.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    24   6.2  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.2  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 92  HPLCDKIIKQYMDHNY*SEPVQRLR 18
           HP+CDKII     H Y SE  Q +R
Sbjct: 168 HPVCDKIIAFPPGHYYDSETKQTVR 192


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 159 WRIRHKNHKNNYHKSCLS 212
           WRI+H  +KN  H++ +S
Sbjct: 247 WRIKHSRNKNLAHEAAIS 264


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 136 GVPTRPLCGE*GTKTTRIIIINHVCPD 216
           G PTRP+CG    K  +I+ + +V  D
Sbjct: 44  GTPTRPMCGF-SLKAIQILSLENVASD 69


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 108 TSSRIVKLRWRPDPSAVWRIRHKNHKNN 191
           T  +I+ L   P+ +A+W I H++ ++N
Sbjct: 342 TEQQIISLVDEPNQNALWIIEHEHSQDN 369


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 156 VWRIRHKNHKNNYHK 200
           VWR+ H     NYHK
Sbjct: 232 VWRLEHMETTENYHK 246


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 48  IMVHVLFDDFVTQRMALDASTSSRIVKLRWRPD 146
           +  HV+ DDF +  +   +  S R+ K  W  D
Sbjct: 57  LATHVICDDFSSPNVQEGSKRSLRLAKTNWIRD 89


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 258 NNLT*SLKYYVFICFVTSSLLTYKNTVIYIM 350
           +NL   LKY + + +   S  TYKN +  I+
Sbjct: 350 SNLITWLKYKILLIYYHKSSSTYKNNIAAIV 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,106
Number of Sequences: 5004
Number of extensions: 27279
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)