Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E11
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0494 + 3804913-3805679,3806341-3806530                           29   1.5  
05_03_0062 - 7917596-7918129,7918279-7918447,7919007-7919182,791...    27   4.4  
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658...    27   5.9  
11_06_0636 - 25711965-25712232,25712438-25712502,25713033-257132...    26   7.7  
11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846     26   7.7  
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090...    26   7.7  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    26   7.7  

>11_01_0494 + 3804913-3805679,3806341-3806530
          Length = 318

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 201 IYDNYSCGFCALFATQRTGRDASAILLYESSC 106
           +YD+Y+   C + +  RT  DAS +L+   +C
Sbjct: 244 VYDHYNELMCTIRSQPRTAADASGLLVGRETC 275


>05_03_0062 -
           7917596-7918129,7918279-7918447,7919007-7919182,
           7919235-7919360,7920196-7920342
          Length = 383

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 160 HTADGSGRQRNFTIRELVLASSAIRCVTKS 71
           HT D SG   NF++R  +LA S    VT+S
Sbjct: 5   HTIDDSGYMMNFSVR--LLAVSCAHAVTRS 32


>12_02_0700 +
           22259921-22260207,22264678-22264750,22265062-22265802,
           22265849-22266424,22266505-22266957
          Length = 709

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 302 KTNEDIILKRLSKVVIKIEEN 240
           K N+ I++ RLS++V+ +E+N
Sbjct: 502 KLNDSIVVDRLSEMVVDVEDN 522


>11_06_0636 -
           25711965-25712232,25712438-25712502,25713033-25713296,
           25713405-25713854
          Length = 348

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 160 HTADGSGRQRNFTIRELVLASSAIRCVTKSSNNTW 56
           HTA   GR+ N ++R L + + A+     ++N+ W
Sbjct: 190 HTASDHGRRLNSSVRSLRVMNPALSHHQLANNSAW 224


>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
          Length = 173

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 77  CHTADGTGCQHELSYSKIALASRP 148
           C TADGT    +++Y  +AL   P
Sbjct: 144 CATADGTSLARQINYIDLALKESP 167


>06_03_1367 +
           29607008-29607501,29608726-29608906,29609006-29609065,
           29609486-29609649,29609723-29609888,29609889-29609957,
           29610060-29610155,29610345-29610389,29610765-29610835,
           29610996-29611062,29611150-29611200,29611276-29611686
          Length = 624

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 188 ILVVFVPYSPHS-GRVGTPAQFYYTRARAGIQCHPLCDKIIKQYMD 54
           +L  F+  SP   GRV   AQ ++  A  G+ C PLC KI  QY D
Sbjct: 437 LLEDFLCMSPDKDGRVN--AQDFW--AHFGLNCTPLCKKIF-QYFD 477


>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 237  MIFFNFYNNLT*SLK---YYVFICFVTSSLLTYKNTVIYIML 353
            MI +NFY N T  L    Y ++  F  ++ +T  ++++Y +L
Sbjct: 934  MILYNFYKNATFVLVLFWYVLYTAFTLTTAITEWSSLLYTVL 975


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,907,915
Number of Sequences: 37544
Number of extensions: 162198
Number of successful extensions: 378
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)