Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E10
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    24   5.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   7.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    23   9.6  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    23   9.6  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    23   9.6  

>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 81  KRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSRDY 233
           + + +  ++ +  R GFD S   NW        GR T      N   ++DY
Sbjct: 427 REYLKKTILTDFMRFGFDGSGADNWFDAGSCIDGRLTSAWNWANNIHTKDY 477


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 105 VQELRRQGF--DESLMSNWVCLVENESGRFTDKIGKVNKNG 221
           V + R++ +  DE+L    +  +  +SG F   + K+ +NG
Sbjct: 20  VSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRNG 60


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 189 TDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDC--HVTCNQLLTD 326
           T+K    N  GSR   ++    +YW  +  T G  C  H   NQ + D
Sbjct: 84  TNKFFDNNLLGSRTNFMYADPFRYWWQSSDTMGGICIAHTDDNQRVMD 131


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 168 ENESGRFTDKIGKVNKNGSRD 230
           ENE   FT KIG +N     D
Sbjct: 445 ENEDVDFTGKIGAINNEDESD 465


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 132 DESLMSNWVCLVENESGRFTDKIG 203
           D S +    CL+ N SG  TD+ G
Sbjct: 194 DASALEKKSCLLPNSSGTLTDQRG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,674
Number of Sequences: 5004
Number of extensions: 23514
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)