Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E08
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    32   0.12 
03_03_0120 - 14608688-14608936,14609249-14609638                       30   0.47 
04_04_1286 + 32387687-32387908,32388046-32389494                       28   1.4  
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791...    28   1.9  
03_06_0191 - 32228642-32228949,32229028-32230567                       27   2.5  
09_02_0366 + 7941550-7942161,7942230-7942775                           26   7.6  
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    26   7.6  

>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 20  KARSGVHEINILDEEGWASLRRARRSDPTATVAPLLAIQLHHPGSYS 160
           K +SG+  IN L +  + S+RR RR    A +AP L   +  P  ++
Sbjct: 602 KEKSGIPNINWLRDRLFRSIRRRRRRGALAPLAPTLTTAIAMPSCFT 648


>03_03_0120 - 14608688-14608936,14609249-14609638
          Length = 212

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 54  WMRRVGRHSAALVAPTRLPLLL 119
           W+R  GRH+AAL  P R+PL L
Sbjct: 65  WLRCRGRHAAALKRPYRVPLPL 86


>04_04_1286 + 32387687-32387908,32388046-32389494
          Length = 556

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 33  EFMKSTSWMRRVGRHSAALVAPTRLPLLLHYSLFNSIILAVTL 161
           E+ K+T   R+    S A+ +  R   L HY +F+  ILAV++
Sbjct: 224 EWFKTTELQRKFTERSPAVQSNLRDNSLYHYCVFSDNILAVSV 266


>02_05_1010 +
           33477878-33478446,33478709-33478834,33478905-33479190,
           33479293-33479484,33479641-33479870,33480379-33480718,
           33481673-33481789,33481940-33482014
          Length = 644

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 131 IQLHHPGSYSGPWVNSEVLATVMSIVVAYVALRNKNK 241
           ++ H     SG W++ EVL  V  IV A V L    K
Sbjct: 77  VRRHRSPLNSGLWISIEVLVNVSQIVAAIVVLSLSRK 113


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 3   GLKSQQRPAPEFMKSTSWMRRVGRHSAALVAPTRLPLLLHYSLFNSIILAVTLA 164
           G+  Q  P+P     TS  +    H A+L AP+R     H +   SI+ A++ A
Sbjct: 22  GISGQPPPSPHAAAPTSTPQAFHAHLASLAAPSR---AAHPATLRSILAALSRA 72


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 70  GVTPPRSSLRPDCHCCS 120
           G  PP S +R  C+CC+
Sbjct: 229 GAAPPASLMRLPCYCCA 245


>01_06_0358 -
           28677781-28677901,28678327-28678430,28678542-28678625,
           28679221-28679265,28679523-28679594,28679721-28679759,
           28679966-28680061,28680492-28680566,28681717-28681764,
           28681888-28681971,28682141-28682341,28682394-28682561,
           28683232-28683372,28683470-28683517,28683845-28684087,
           28684184-28684297,28685134-28685163,28685361-28685951,
           28686033-28686620,28686744-28686863,28687764-28687938,
           28688397-28688562,28688653-28688755,28689227-28689319,
           28690759-28690918,28691754-28691872
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 80  RRARRSDPTATVAPLLAIQLHHPGSYSG 163
           R  RR DP  TVAP     +H  G  +G
Sbjct: 508 RDPRRLDPRRTVAPAATSSIHVKGETTG 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,314,185
Number of Sequences: 37544
Number of extensions: 169819
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)