Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E08
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    42   1e-04
AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine re...    28   1.7  
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical ...    26   7.0  

>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +2

Query: 2   WTEEPAKARSGVHEINILDEEGWASLRRARRSDPTATVAPLLAIQLHHPGSYSGPWVNSE 181
           WT E   A +    INI DEEG A   +           PL  +Q  H G  +   ++SE
Sbjct: 83  WTLEHKDAGAQTFNINIFDEEGAAQYAK------NPVTKPLFTVQQSHGGLATKSPISSE 136

Query: 182 VLATVMSIVVAYVALRNKNKIL 247
            +A ++ ++  Y A+R K +++
Sbjct: 137 TVAVIIVVIGLYYAIRQKTELV 158


>AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 66 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 73  VTPPRSSLRPDCHCCSITRYSTPSSW 150
           +TP R+S+R    C S+ R ST  SW
Sbjct: 292 ITPYRNSIREFLECKSMPRGSTSGSW 317


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 111 VAVGSERRARRSDAQPSSSR 52
           V   S+RR RRSD+Q SS R
Sbjct: 140 VRSNSQRRRRRSDSQESSKR 159


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 111 VAVGSERRARRSDAQPSSSR 52
           V   S+RR RRSD+Q SS R
Sbjct: 140 VRSNSQRRRRRSDSQESSKR 159


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
          protein ZK858.1 protein.
          Length = 841

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 93 RRARRSDAQPSSSRMLIS*TPERAFAGS 10
          RR  +S  QPS+SR   S TPE  ++ S
Sbjct: 10 RRLSQSQEQPSTSRTCKSETPEFGYSDS 37


>AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical
           protein W03G1.6b protein.
          Length = 722

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 120 GATVAVGSERRARRSDAQPSSSRMLIS*TPERAF 19
           G+ V++GS   A  +D +   SR+  +  P+R F
Sbjct: 570 GSPVSIGSAHSANNADGRTPRSRIKTNRLPQRVF 603


>AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical
           protein W03G1.6a protein.
          Length = 726

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 120 GATVAVGSERRARRSDAQPSSSRMLIS*TPERAF 19
           G+ V++GS   A  +D +   SR+  +  P+R F
Sbjct: 570 GSPVSIGSAHSANNADGRTPRSRIKTNRLPQRVF 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,847,302
Number of Sequences: 27780
Number of extensions: 132240
Number of successful extensions: 318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)