Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E07
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   0.93 
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   2.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   4.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   4.9  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    24   6.5  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    23   8.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    23   8.6  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    23   8.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   8.6  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 214 GTCRPDLNSRINHTCD--CPLGFAGASCQM 297
           G C   +  R+NH+CD  C + F GA  Q+
Sbjct: 182 GMCLDTILCRLNHSCDPNCQIIFDGAIVQL 211


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 155 NGFGTRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSAS 36
           NG+    ++YV  N       M+ +AQ+    H H P  S
Sbjct: 37  NGYFQDSNEYVEPNIPAVYGSMIPVAQQLQQHHVHTPGES 76


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 167 REVINGFGTRFSQYVPVNPSGQMHDMLSIAQE 72
           RE+   F +RF++    +P   + D+LSI Q+
Sbjct: 701 RELEPSFRSRFTEIYVHSPDQNLDDLLSIIQK 732


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 170 IREVINGFGTRFSQYVPVNPSGQMHD 93
           ++ ++N F   + QY P +P+G  HD
Sbjct: 510 VKAIMNTF---YKQYKPFDPAGNKHD 532


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 56  WHVPSASGISPLSLLLH 6
           WH PS S ++ LS  LH
Sbjct: 60  WHGPSTSSLAALSYNLH 76


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 135 LAVCSSEPKRANARYAINCTGTSVAALACPFSLRYIP 25
           LA    E  RAN       + +SV AL  P  + YIP
Sbjct: 191 LASSVEESNRANNTSPYPPSNSSVTALPKPSKIAYIP 227


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 322 RHFEVIAKAFDKKRRQIQVDSHRYG*SLNLSQVYMYHRYDKAVENMDRYNRFE 164
           + FE++AKAFD+      +    Y    N S++ +   Y    E  +R   F+
Sbjct: 312 KRFEILAKAFDQLEIPYTIPDGSYYTMANFSKLKLPKDYPFPEEIANRPRDFK 364


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 128 YVPVNPSGQMHDMLSIAQEPPL 63
           Y P N S   H M  I Q+ PL
Sbjct: 158 YRPFNQSSHYHPMCPIEQDKPL 179


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 107 GQMHDMLSIAQE---PPLRHWHVPSASGIS 27
           G++H +  I+ E   P + HWH    +G+S
Sbjct: 240 GKIHVINDISNEKFNPQILHWHANPLNGLS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,498
Number of Sequences: 5004
Number of extensions: 27445
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)