Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_E07
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 34 0.029
12_02_0821 + 23443733-23444425 32 0.090
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 30 0.48
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 29 0.63
02_04_0413 + 22681957-22682035,22682253-22682788 28 1.5
01_01_1104 + 8747053-8747478 28 1.9
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566... 27 2.6
02_01_0011 + 78277-78487,78594-79417 27 2.6
11_01_0459 + 3546101-3548771,3548871-3549238 27 3.4
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 27 4.5
12_02_1279 + 27510605-27513301 26 5.9
08_02_0168 - 13640894-13641973 26 5.9
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 26 5.9
02_05_0979 + 33268294-33269595 26 5.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 26 7.8
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 26 7.8
02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368... 26 7.8
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 26 7.8
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 33.9 bits (74), Expect = 0.029
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 151 PLITSRIGYSDPCSLRPCRNGGTCRPDLNSRINHTCDCPLGF 276
P +T+ Y DPC L+ C +GG+C + +S H C C GF
Sbjct: 2 PSLTNLSIY-DPCLLQYCGDGGSC--ERSSEFGHRCACHDGF 40
>12_02_0821 + 23443733-23444425
Length = 230
Score = 32.3 bits (70), Expect = 0.090
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 172 GYSDPCSLRPCRNGGTCRPDLNSRINHTCDCPLG--FA-GASCQMP 300
G++ P + P GG P L ++ CDCPLG F+ GA+C+ P
Sbjct: 124 GFNVPVVVSPQAVGGGQCPALGCVVDLNCDCPLGQRFSDGAACRGP 169
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 29.9 bits (64), Expect = 0.48
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 58 CRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNGGTCRPDLN 237
CR+ S D+I G+ C+ NP + + C LRP + G C D
Sbjct: 280 CRSTNSECFDTID---GQGYRCNCCQGYEGNPYLDGGCTDINEC-LRPEKYG--CYGDCT 333
Query: 238 SRI-NHTCDCPLGFAG 282
+ + +HTC CP G +G
Sbjct: 334 NMLGSHTCVCPPGTSG 349
>07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +1
Query: 34 PEAEGTCQCRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNG 213
P AEG+C +GG + + C T C+ + + + S P + + CRNG
Sbjct: 940 PPAEGSC---SGGEGGTNGVGRCCTSVKRPTCCD------MGAAEVSDSSPETAKDCRNG 990
Query: 214 GTCRPDLNS 240
C +NS
Sbjct: 991 RCCAKTMNS 999
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +1
Query: 46 GTCQCRNGGSCAIDSISC---ICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNGG 216
G QC SC C C G +G C P+P + PC PC G
Sbjct: 125 GGGQCPPSPSCENHHPPCKPGCCCCGCSGGECPPP-PSPPCQHECPPTPPCEHPPCSESG 183
Query: 217 TCRPDLNSRIN 249
C NS N
Sbjct: 184 CCDKGCNSCCN 194
>01_01_1104 + 8747053-8747478
Length = 141
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 136 NRVPNPLITSRIGYSDPCSLRPCRNGGTCRPDLNSR 243
N+VP P +T +GY + + PC + C + +++
Sbjct: 9 NKVPIPTVTLELGYGEDKAHTPCIDTTDCSKETHAK 44
>02_04_0274 -
21455942-21456325,21456453-21456521,21456622-21456687,
21456796-21456861,21456982-21457149,21457262-21457351,
21457578-21457622,21458112-21458747
Length = 507
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 52 CQCRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGY-SDPCSL 195
C +NGG+ ++S + P G N P P + +R G +DP S+
Sbjct: 262 CGGKNGGAAPFVNLSEVLPKGNGSGSAGNGAPKPRVRARRGQATDPHSI 310
>02_01_0011 + 78277-78487,78594-79417
Length = 344
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 118 TGTYCENRVPNPLITSRIGYSD 183
TG +C R+P I SR+G +
Sbjct: 57 TGRFCNGRIPTDFIASRLGLKE 78
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +1
Query: 10 SNNDRGDIPEAEGTCQCRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGYSDPC 189
SN GDIP A G C+ I+S S P+ G +V N L + + +S P
Sbjct: 519 SNKLSGDIPNALGNCESLEYIMLGINSFSGSIPISL-GNISNLKVLN-LSHNNLTWSIPA 576
Query: 190 SL 195
SL
Sbjct: 577 SL 578
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 13 NNDRGDIPEAEGTCQCRNGGSCAID 87
+ DR P G+C+ +G +CA D
Sbjct: 425 DEDRSSSPSVSGSCESSDGAACAGD 449
>12_02_1279 + 27510605-27513301
Length = 898
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 199 PCRNGGTCRPDLNSRINHTCDCPLGFA 279
PCR+ G C P N +C CP F+
Sbjct: 314 PCRSLGLCTPGTN---GSSCSCPDAFS 337
>08_02_0168 - 13640894-13641973
Length = 359
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 109 AGKCTICYQLHRNLRC 62
AGKC+IC Q H+++ C
Sbjct: 305 AGKCSICSQDHKDVVC 320
>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -1
Query: 218 VPPLRQGRREHGSL*PIREVINGFGTRFSQY----VPVNPSGQMHDMLSIAQE 72
+PPL +GR + ++ + + GF +Y + V PSG HD L I E
Sbjct: 1249 IPPLTKGR--YRNVMDMNAGMGGFAAALMKYPLWVMNVVPSGSAHDTLGIIYE 1299
>02_05_0979 + 33268294-33269595
Length = 433
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 116 NPSGQMHDMLSIAQEPPLRHWHVP 45
+PS + + PP RHWH P
Sbjct: 205 SPSSSWRPPAAASTTPPPRHWHYP 228
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 94 SCICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNGGTCR 225
S IC L F ++ +++P +R Y D +LR R+G CR
Sbjct: 245 SVICELWFALSWILDQLPKWSPVTRETYLDRLALRYERDGEPCR 288
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +1
Query: 7 CSNNDRGDIPEAEGTCQCRNGGSCAIDS---ISCICPLGFTGTYCENRVPNPLIT 162
CSN D D+ + G+C +DS + + PL T T C +R P T
Sbjct: 164 CSNIDEPDLVVSPSPLVSWRAGACMVDSGKQLFLLTPLTKTKT-CSSRCPKSSTT 217
>02_05_1157 -
34533625-34533875,34535279-34536340,34536673-34536837,
34536993-34537941
Length = 808
Score = 25.8 bits (54), Expect = 7.8
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Frame = +1
Query: 58 CRNGGSCAIDSIS-----CICPLGFTGTYCENRVPNPLITSRIGYSDPCS---LRPCRNG 213
CR+ S +DS + C C G+ G NP + D C PC
Sbjct: 281 CRSTNSDCVDSTNGVGYRCKCSNGYDG--------NPYLDGGCTDIDECQHLDKYPCH-- 330
Query: 214 GTCRPDLNSRINHTCDCPLGFAG 282
G C L + CDCP GF+G
Sbjct: 331 GVCTNLLGG---YKCDCPHGFSG 350
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 55 QCRNGGS-CAIDSISCICPLGFTG 123
QC GGS CA +++C PL + G
Sbjct: 265 QCAQGGSGCAPGALACAAPLYYGG 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,856,768
Number of Sequences: 37544
Number of extensions: 207148
Number of successful extensions: 565
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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