Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E05
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    38   8e-04
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.088
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   1.9  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   3.3  

>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +1

Query: 274 RFYTDDSPGVKVGQVPVSVMSLLFIASVSMLHI 372
           + YTD++ G KV  V V V+S+ FIASV +LHI
Sbjct: 59  KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.088
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 119 VLHLWDLEVDRRVRLLQPHVQLAEALFVNENXXXXXXXPEI 241
           V+++WD+E  + VR L+ H +   AL  N+N        E+
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEV 229


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 289 DSPGVKVGQVPVSVMSLLFIASVSMLHIWGKYT-RA*FRNNC 411
           D+P  +  ++P+ + S+    +V ++ + GK++ RA F N C
Sbjct: 362 DTPYPQFEKIPLEIYSIFAAINVYIIELGGKFSNRAKFNNLC 403


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 119 VLHLWDLEVDRRVRLLQPH 175
           ++HLWD+   RR++ ++ H
Sbjct: 528 LIHLWDIGTGRRIKTMRGH 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,493
Number of Sequences: 5004
Number of extensions: 33814
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)