Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E05
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             52   2e-07
11_01_0023 - 162079-162402                                             52   2e-07
01_05_0378 + 21628517-21628759                                         44   6e-05
12_01_0474 + 3718846-3719097                                           42   3e-04
07_03_0850 - 22003271-22003516,22004038-22004202,22005065-220051...    29   1.9  
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191...    28   4.3  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    27   7.5  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +1

Query: 160 ATSAPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSPGVKVGQVPVSVMSL 339
           AT  PR  +                       G   M RFYTD++PG+++    V VMSL
Sbjct: 22  ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81

Query: 340 LFIASVSMLHIWGKYTRA 393
            FI  V+ LH++GK  R+
Sbjct: 82  CFIGFVTALHVFGKLYRS 99


>11_01_0023 - 162079-162402
          Length = 107

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +1

Query: 160 ATSAPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSPGVKVGQVPVSVMSL 339
           AT  PR  +                       G   M RFYTD++PG+++    V VMSL
Sbjct: 22  ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81

Query: 340 LFIASVSMLHIWGKYTRA 393
            FI  V+ LH++GK  R+
Sbjct: 82  CFIGFVTALHVFGKLYRS 99


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = +1

Query: 256 GSGGMWRFYTDDSPGVKVGQVPVSVMSLLFIASVSMLHIWGKYTR 390
           G+  M +FYTD++ G K+    V +MS+ FIA V++LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +1

Query: 256 GSGGMWRFYTDDSPGVKVGQVPVSVMSLLFIASVSMLHIWGKYTR 390
           G+  M +FYT+++ G K+    V +MS+ F A V++LH++GK  R
Sbjct: 35  GTSTMLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79


>07_03_0850 -
           22003271-22003516,22004038-22004202,22005065-22005128,
           22005785-22006074
          Length = 254

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 356 CPCFTFGANTQEHNLGTTVFLRMI 427
           CPC+ FG N +  NLG+     M+
Sbjct: 98  CPCYRFGKNMRRANLGSCFLQAMV 121


>07_03_1752 -
           29218348-29218524,29218593-29218736,29218957-29219148,
           29219225-29219440,29219873-29220010,29220137-29220232,
           29221204-29221357,29221976-29222098,29222291-29222418,
           29222669-29222773,29223396-29223437,29223631-29223746,
           29223805-29223916
          Length = 580

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 305 KWVKFQYRSCHFSLLHQ 355
           KW+K +YRSC  S+LH+
Sbjct: 202 KWLKPEYRSCGRSMLHK 218


>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 455  CSTILFIISQSSEGRQLFLNYALVYL 378
            C +ILF + Q ++G Q +L+ +L+YL
Sbjct: 1662 CYSILFTLFQLTKGAQDYLSTSLIYL 1687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,707,937
Number of Sequences: 37544
Number of extensions: 207916
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)