Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E04
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical
           protein T28D9.3a protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 280 LHVKIFFKI--YMTYKCVGYVMKIVMNIIDTH 369
           LHV +F ++  Y  Y  +G+VM I +NI+  H
Sbjct: 115 LHV-LFVRLLTYFGYSQIGFVMNIALNIVTKH 145


>U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical
           protein T28D9.3c protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 280 LHVKIFFKI--YMTYKCVGYVMKIVMNIIDTH 369
           LHV +F ++  Y  Y  +G+VM I +NI+  H
Sbjct: 116 LHV-LFVRLLTYFGYSQIGFVMNIALNIVTKH 146


>U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical
           protein T28D9.3b protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 280 LHVKIFFKI--YMTYKCVGYVMKIVMNIIDTH 369
           LHV +F ++  Y  Y  +G+VM I +NI+  H
Sbjct: 116 LHV-LFVRLLTYFGYSQIGFVMNIALNIVTKH 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,985,602
Number of Sequences: 27780
Number of extensions: 192391
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)