Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E03
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    96   5e-22
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    96   5e-22
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    35   0.002
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   1.0  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    24   2.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   3.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    24   3.2  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    23   4.2  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    23   4.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    23   5.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    23   7.3  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    22   9.6  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    22   9.6  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    22   9.6  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 96.3 bits (229), Expect = 5e-22
 Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
 Frame = +2

Query: 2   GVLRVNGRPLDC-KPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 178
           G+++VNG PL   +P +L+ K+ EPIL+ G +KF+GVDIRV V GGGHV+Q+YAIRQAIS
Sbjct: 24  GLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAIS 83

Query: 179 KALIAFYQK 205
           KA++A+YQK
Sbjct: 84  KAIVAYYQK 92


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 96.3 bits (229), Expect = 5e-22
 Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
 Frame = +2

Query: 2   GVLRVNGRPLDC-KPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 178
           G+++VNG PL   +P +L+ K+ EPIL+ G +KF+GVDIRV V GGGHV+Q+YAIRQAIS
Sbjct: 24  GLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAIS 83

Query: 179 KALIAFYQK 205
           KA++A+YQK
Sbjct: 84  KAIVAYYQK 92


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 2   GVLRVNGRPLDCKPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISK 181
           G   VNG P D   + + ++      L    + +  ++  TV GGG   Q  A+  AISK
Sbjct: 28  GKFYVNGSPFDVYFQRMVHRKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAISK 87

Query: 182 ALI 190
           +LI
Sbjct: 88  SLI 90


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 153 TCATCPPPFTVTLISTP 103
           T  +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 199 VESDKGFRDGLSDCINLCNMSTTF 128
           + +D  F   +S  + +CN+STTF
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTF 254


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 178 RDGLSDCINLCNMSTTFYSHSNIHT 104
           RD   +CI +CNM    +    IHT
Sbjct: 685 RDAFDNCITVCNMEN--FDPLGIHT 707


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 178 RDGLSDCINLCNMSTTFYSHSNIHT 104
           RD  ++CI +CNM    +    IHT
Sbjct: 299 RDAANNCITVCNMEN--FDPLGIHT 321


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 18  MDAPSTVNPDFFSTNYRNLSFC*ARKSSLVWI 113
           M+ P ++NPDF  +N   +S     +S  VW+
Sbjct: 316 MELPISLNPDFLISNIHKVS-----ESPRVWV 342


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 48  FFSTNYRNLSFC*ARKSSLVW 110
           F STN+++ S   + KS+L+W
Sbjct: 79  FLSTNFQDCSTLPSVKSTLIW 99


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 205 FLVESDKGFRDGLSDCINLCNMSTTFYS--HSNIHTREL 95
           F    D+GFR   S C N  N+  T  S   ++IH  EL
Sbjct: 706 FTTWGDQGFRPSDSICYNDFNLLETANSDAEASIHELEL 744


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = -3

Query: 150 CATCPPPFTVTLISTP-ENFSLP 85
           C TCP  F  T I  P E  +LP
Sbjct: 278 CETCPNSFHFTCIDPPIEEKNLP 300


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 32  DCKPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQ 151
           D  P+   +++++ + L  + +  GVD+     GG H  Q
Sbjct: 266 DWLPKGQGWEIEDTVALAARLRDGGVDLIDVSSGGNHKDQ 305


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 181 FRDGLSDCINLCNMSTTFYSHSNI 110
           F D + DC + C +   F + SN+
Sbjct: 314 FYDNIPDCKSWCGIIYQFITDSNV 337


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 202 LVESDKGFRDGLSDCINLCNMSTTFYSHSNIH 107
           L E   G  DG+S  +NL N + T   H   H
Sbjct: 118 LYEYVDGNSDGISFVLNLENNNDTSVYHMTFH 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,598
Number of Sequences: 5004
Number of extensions: 15833
Number of successful extensions: 50
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)