Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_E03
(206 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 85 1e-17
11_01_0155 - 1287003-1287452 85 1e-17
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 32 0.073
11_01_0523 - 4109070-4109984,4110532-4110936 28 1.2
07_03_1285 + 25477542-25477625,25477776-25477832,25477973-254780... 28 1.2
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 26 3.6
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 26 4.8
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 26 4.8
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 25 6.3
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 25 8.4
05_01_0312 + 2460434-2460892 25 8.4
>12_01_0152 - 1168928-1169377
Length = 149
Score = 84.6 bits (200), Expect = 1e-17
Identities = 36/69 (52%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 GVLRVNGRPLDC-KPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 178
G+++VNG P++ +P +L+ K EPILL G+ +F +D+R+ V+GGG +Q+YAIRQAI+
Sbjct: 33 GLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIA 92
Query: 179 KALIAFYQK 205
KAL+A+YQK
Sbjct: 93 KALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 84.6 bits (200), Expect = 1e-17
Identities = 36/69 (52%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 GVLRVNGRPLDC-KPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAIS 178
G+++VNG P++ +P +L+ K EPILL G+ +F +D+R+ V+GGG +Q+YAIRQAI+
Sbjct: 33 GLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIA 92
Query: 179 KALIAFYQK 205
KAL+A+YQK
Sbjct: 93 KALVAYYQK 101
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 31.9 bits (69), Expect = 0.073
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 110 DIRVTVKGGGHVAQVYAIRQAISKAL 187
D+ TVKGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 131 GGGHVAQVYAIRQAISKALIAFY 199
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>07_03_1285 +
25477542-25477625,25477776-25477832,25477973-25478040,
25478187-25478391,25478429-25478586,25478865-25478940,
25479065-25479124,25479186-25479236,25479663-25479741,
25480183-25480271
Length = 308
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 26 PLDCKPRLLQYKLQE 70
PLDC P +LQYK+++
Sbjct: 283 PLDCAPAMLQYKMRQ 297
>02_05_0056 +
25461423-25461708,25461986-25462026,25466047-25466083,
25466451-25466594,25466882-25466974,25467067-25467155,
25467241-25467537,25467629-25467765,25467860-25467952,
25468061-25468166,25468243-25468395
Length = 491
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 119 VTVKGGGHVAQVYAIRQAIS 178
VT++G GH ++A RQA+S
Sbjct: 455 VTIRGAGHEVPLHAPRQALS 474
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 152 PVQHVHHLLQSL*YPHQRTFPCLAKG*VPVVCTEEVWVYSRG 27
PVQ + L++ YP + VP+ C EE WV RG
Sbjct: 223 PVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRG 264
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 122 TVKGGGHVAQVYAIRQAIS 178
TVKGGGH A Y +Q ++
Sbjct: 403 TVKGGGHTAPEYMPKQCLA 421
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 114 ISTPENFSLPSKRIGSCSLY*RSLGLQSRGR 22
++ E L K +GSC LY +SL GR
Sbjct: 331 VTDGERLPLAVKELGSCDLYPQSLKHNPNGR 361
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 152 PVQHVHHLLQSL*YPHQRTFPCLAK 78
P+ H H L L PH R+ PC A+
Sbjct: 38 PLLHHHRLRSDL--PHTRSLPCRAR 60
>05_01_0312 + 2460434-2460892
Length = 152
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 92 EKFSGVDIRVTVKGGGHVAQVYA 160
E+ G RV VKGGG V +A
Sbjct: 115 EEVGGAAFRVPVKGGGRVVGFFA 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,322,275
Number of Sequences: 37544
Number of extensions: 113970
Number of successful extensions: 258
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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