Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E02
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   0.93 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   5.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +2

Query: 11  HSDTPTPLPVDLSAESSSVTSLVNLPLRKTGSATSSDSGHGSCTATSCTRXXXXXXXXXX 190
           H+ T TP P   S ++S+VTS     +  T + T + +   + TAT+             
Sbjct: 184 HNSTSTPPPTITSTKASTVTSTEATTVTTTTAVTVTATETYTVTATNGGSTITSTGASTV 243

Query: 191 XYTLAAQVARLERMSRAHSHEGVT 262
             T  + V   +R + A + +  T
Sbjct: 244 TSTQPSTVTSTQRKNTATTTKTTT 267


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 156 VQLVAVHDPCPLSL-----EVAEPVFRNGKFTSDVTLLLSADKSTGRGV 25
           +Q + V  PC L L      V  P F NGK  S++  LL+   ST  G+
Sbjct: 24  LQHIGVPSPCNLRLYHELISVIVPTFWNGKINSEIDFLLAKCFSTLLGL 72


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 56  SSSVTSLVNLPLRKTGSATSSDSGHGSCTATS 151
           S  VTS V   +  TGS TSS  G G+ +ATS
Sbjct: 894 SIPVTSSVAPAVTSTGSETSSVVGSGTDSATS 925


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 14  SDTPTPLPVDLSAESSSVTSLVNLPLRKTGSATSS 118
           + TPTP P  ++A+ S + S ++ P +  GS +S+
Sbjct: 422 NQTPTPAPFSIAAKKSHLPSKLSFP-QDGGSLSSA 455


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +2

Query: 20  TPTPLPVDLSAESSSVTSLVNLPLRKTGSATSSDSGHGSCTATSCTRXXXXXXXXXXXYT 199
           T TP+    S  SSS     N     TG++TS  +   S   TS  R            T
Sbjct: 600 TSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSIST 659

Query: 200 LAAQVA 217
            ++  A
Sbjct: 660 SSSSTA 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,552
Number of Sequences: 5004
Number of extensions: 32785
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)