Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_E02
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    28   6.8  
10_01_0265 + 2808271-2809064,2809624-2809807                           27   8.9  

>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 11  HSDTPTPLPVDLSAESSSVTSLVNLPLRKTGSATSSDSGHGSCTA 145
           H D P      + AESSS +S + + +    SA++S +G  SC A
Sbjct: 37  HPDDPAAAAAAVGAESSSASSYLGV-VAAAASASASAAGGFSCGA 80


>10_01_0265 + 2808271-2809064,2809624-2809807
          Length = 325

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 80  NLPLRKTGSATSSDSGHGSCTATSC 154
           NLP+  T SATS   G G C AT C
Sbjct: 148 NLPMLVTPSATS---GSGKCAATGC 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,374
Number of Sequences: 37544
Number of extensions: 206400
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)